Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 5.3e-50 200.7 99 100.0
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 1.7e-48 195.7 99 94.9
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 5.0e-48 194.1 99 94.9
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 5.0e-48 194.1 99 94.9
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 5.0e-48 194.1 99 94.9
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 6.5e-48 193.7 99 94.9
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 1.1e-47 193.0 99 92.9
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.1e-47 193.0 99 92.9
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.1e-47 193.0 99 92.9
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 1.1e-47 193.0 99 92.9
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 2.5e-47 191.8 99 92.9
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 5.5e-47 190.7 99 90.9
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 5.5e-47 190.7 99 92.9
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 7.2e-47 190.3 99 93.9
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 9.4e-47 189.9 99 92.9
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 1.2e-46 189.5 99 89.9
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.2e-46 189.5 99 90.9
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 1.2e-46 189.5 99 91.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 1.6e-46 189.1 99 91.9
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 2.1e-46 188.7 99 89.9
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 2.1e-46 188.7 99 89.9
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 90.9
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 90.9
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 91.9
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 3.6e-46 188.0 97 93.8
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 4.7e-46 187.6 106 88.7
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 6.1e-46 187.2 99 90.9
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 6.1e-46 187.2 99 90.9
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 6.1e-46 187.2 99 90.9
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 6.1e-46 187.2 99 91.9
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 6.1e-46 187.2 99 90.9
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 1.0e-45 186.4 99 90.9
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 1.0e-45 186.4 99 91.9
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.8e-45 185.7 99 89.9
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.8e-45 185.7 99 91.9
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 2.3e-45 185.3 99 88.9
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 3.0e-45 184.9 99 88.9
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 3.0e-45 184.9 99 90.9
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 4.0e-45 184.5 99 91.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 4.0e-45 184.5 99 91.9
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 88.9
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 87.9
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 6.8e-45 183.7 99 89.9
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 6.8e-45 183.7 99 88.9
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 8.8e-45 183.3 99 90.9
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 8.8e-45 183.3 99 90.9
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-44 183.0 99 87.9
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-44 183.0 99 87.9
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 89.9
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 89.9
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 89.9
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 89.9
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 89.9
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 89.9
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 2.6e-44 181.8 99 88.9
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 3.4e-44 181.4 99 87.9
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 87.9
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 88.9
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 86.9
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 7.5e-44 180.3 99 88.9
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 86.9
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 86.9
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 87.9
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.3e-43 179.5 88 100.0
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 87.9
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 88.9
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 86.9
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 2.2e-43 178.7 99 85.9
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 2.2e-43 178.7 98 88.8
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 86.9
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.1e-42 176.4 99 84.8
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.4e-42 176.0 99 86.9
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 84.8
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 5.4e-42 174.1 112 80.4
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 81.8
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 2.0e-41 172.2 95 86.3
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 2.0e-41 172.2 95 86.3
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 81.8
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 2.0e-41 172.2 95 86.3
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.7e-41 171.8 95 86.3
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 2.7e-41 171.8 95 86.3
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 2.7e-41 171.8 95 86.3
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 2.7e-41 171.8 95 86.3
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 2.7e-41 171.8 95 86.3
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 2.7e-41 171.8 99 84.8
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 3.5e-41 171.4 95 85.3
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 3.5e-41 171.4 95 85.3
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 3.5e-41 171.4 95 85.3
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 3.5e-41 171.4 95 85.3
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 3.5e-41 171.4 95 85.3
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 5.9e-41 170.6 95 85.3
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 7.7e-41 170.2 99 81.8
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.9e-40 168.3 99 80.8
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 5.0e-40 167.5 95 84.2
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 8.6e-40 166.8 99 77.8
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 1.5e-39 166.0 99 79.8
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 1.9e-39 165.6 99 80.8
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 9.5e-39 163.3 142 63.4
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 2.8e-38 161.8 99 73.7
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 3.6e-38 161.4 150 60.0
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 6.1e-38 160.6 94 86.2
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 1.0e-37 159.8 87 85.1
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 5.7e-36 154.1 98 71.4
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.2e-33 146.4 150 54.7
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 2.7e-33 145.2 86 81.4
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 7.8e-33 143.7 75 90.7
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.8e-32 141.4 99 73.7
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.5e-31 139.4 73 91.8
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 5.6e-31 137.5 73 89.0
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 7.3e-31 137.1 72 90.3
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 9.5e-31 136.7 78 84.6
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 9.5e-31 136.7 72 90.3
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 1.6e-30 136.0 72 87.5
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 1.6e-30 136.0 72 91.7
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.0e-29 133.3 72 87.5
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 5.2e-29 131.0 100 64.0
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 1.5e-28 129.4 72 86.1
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 1.1e-26 123.2 99 61.6
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 3.2e-26 121.7 69 81.2
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 3.2e-26 121.7 76 73.7
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 3.2e-26 121.7 60 93.3
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 9.2e-26 120.2 73 78.1
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 9.2e-26 120.2 75 80.0
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 2.0e-25 119.0 72 76.4
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.7e-24 115.9 62 87.1
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 3.9e-24 114.8 92 58.7
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 5.0e-24 114.4 94 60.6
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 3.1e-21 105.1 58 84.5
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 3.4e-20 101.7 57 86.0
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 5.8e-20 100.9 62 82.3
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 4.7e-14 81.3 93 45.2
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 2.0e-12 75.9 42 83.3
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 3.7e-11 71.6 37 97.3


User provided reference genes

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