Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002984 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 1.8e-39 165.6 93 100.0
CSS0033442 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 4.1e-20 101.3 77 77.9
CSS0043485 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 4.1e-20 101.3 77 77.9
Atru.chr1.3339 Acer truncatum HOM05D001057 ORTHO05D003212 9.6e-17 90.1 62 75.8
Dinv30479 Davidia involucrata HOM05D001057 ORTHO05D003212 1.6e-16 89.4 82 59.8
Potri.001G184700 Populus trichocarpa HOM05D001057 ORTHO05D003212 2.1e-16 89.0 62 75.8
QL05p021627 Quercus lobata HOM05D001057 ORTHO05D003212 2.8e-16 88.6 62 72.6
Eucgr.J02957 Eucalyptus grandis HOM05D001057 ORTHO05D003212 3.6e-16 88.2 80 61.2
Actinidia32728 Actinidia chinensis HOM05D001057 ORTHO05D003212 6.2e-16 87.4 62 74.2
Dinv38018 Davidia involucrata HOM05D001057 ORTHO05D003212 6.2e-16 87.4 62 74.2
FAN08G3370 Fragaria x ananassa HOM05D001057 ORTHO05D003212 6.2e-16 87.4 73 64.4
PGR102G2468 Punica granatum HOM05D001057 ORTHO05D003212 6.2e-16 87.4 62 75.8
RcHm_v2.0_Chr7g0217621 Rosa chinensis HOM05D001057 ORTHO05D003212 8.1e-16 87.0 73 65.8
TAR624G0186 Trochodendron aralioides HOM05D001057 ORTHO05D003212 8.1e-16 87.0 62 74.2
vmacro18886 Vaccinium macrocarpon HOM05D001057 ORTHO05D003212 1.1e-15 86.7 69 69.6
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 3.1e-15 85.1 78 62.8
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 3.1e-15 85.1 78 62.8
Sc15g0001360 Simmondsia chinensis HOM05D001057 ORTHO05D003212 3.1e-15 85.1 62 71.0
FAN04G2611 Fragaria x ananassa HOM05D001057 ORTHO05D003212 4.0e-15 84.7 73 63.0
Nn2g11683 Nelumbo nucifera HOM05D001057 ORTHO05D003212 5.2e-15 84.3 62 71.0
Rhsim08G0223600 Rhododendron simsii HOM05D001057 ORTHO05D003212 6.8e-15 84.0 75 61.3
Actinidia21683 Actinidia chinensis HOM05D001057 ORTHO05D003212 8.9e-15 83.6 62 74.2
Ca_20372_v3 Cicer arietinum L. HOM05D001057 ORTHO05D003212 8.9e-15 83.6 77 59.7
GSVIVG01017074001 Vitis vinifera HOM05D001057 ORTHO05D003212 8.9e-15 83.6 66 66.7
TPR.G5224 Trifolium pratense HOM05D001057 ORTHO05D003212 1.2e-14 83.2 75 62.7
Ciclev10026714m.g Citrus clementina HOM05D001057 ORTHO05D003212 2.0e-14 82.4 62 69.4
Prupe.3G066500 Prunus persica HOM05D001057 ORTHO05D003212 2.0e-14 82.4 60 71.7
Manes.11G037700 Manihot esculenta HOM05D001057 ORTHO05D003212 2.6e-14 82.0 62 69.4
CiPaw.01G235500 Carya illinoinensis HOM05D001057 ORTHO05D003212 3.4e-14 81.6 72 61.1
FvH4_5g26750 Fragaria vesca HOM05D001057 ORTHO05D003212 3.4e-14 81.6 73 61.6
FAN18G3220 Fragaria x ananassa HOM05D001057 ORTHO05D003212 3.4e-14 81.6 73 61.6
Lj3g0027497 Lotus japonicus HOM05D001057 ORTHO05D003212 4.4e-14 81.3 73 60.3
Medtr4g013200 Medicago truncatula HOM05D001057 ORTHO05D003212 4.4e-14 81.3 73 63.0
Phvul.010G148600 Phaseolus vulgaris HOM05D001057 ORTHO05D003212 5.8e-14 80.9 71 62.0
FAN13G0902 Fragaria x ananassa HOM05D001057 ORTHO05D003212 7.6e-14 80.5 73 61.6
Glyma.08G204600 Glycine max HOM05D001057 ORTHO05D003212 1.3e-13 79.7 64 65.6
Thecc.06G092700 Theobroma cacao HOM05D001057 ORTHO05D003212 2.2e-13 79.0 62 71.0
AT1G52220 Arabidopsis thaliana HOM05D001057 ORTHO05D003212 2.9e-13 78.6 79 54.4
Glyma.07G019400 Glycine max HOM05D001057 ORTHO05D003212 2.9e-13 78.6 64 65.6
Potri.003G052200 Populus trichocarpa HOM05D001057 ORTHO05D003212 2.9e-13 78.6 62 64.5
Gorai.011G074300 Gossypium raimondii HOM05D001057 ORTHO05D003212 4.9e-13 77.8 82 57.3
MD09G1209100 Malus domestica HOM05D001057 ORTHO05D003212 4.9e-13 77.8 75 61.3
CARHR042350 Cardamine hirsuta HOM05D001057 ORTHO05D003212 6.4e-13 77.4 80 57.5
Psat7g250040 Pisum sativum HOM05D001057 ORTHO05D003212 6.4e-13 77.4 73 60.3
Aqoxy7G03826 Aquilegia oxysepala HOM05D001057 ORTHO05D003212 1.1e-12 76.6 61 62.3
EL10Ac9g22033 Beta vulgaris HOM05D001057 ORTHO05D003212 1.1e-12 76.6 75 53.3
Hund06631 Selenicereus undatus HOM05D001057 ORTHO05D003212 1.1e-12 76.6 79 53.2
Gohir.D10G070000 Gossypium hirsutum HOM05D001057 ORTHO05D003212 1.4e-12 76.3 82 56.1
AUR62011665 Chenopodium quinoa HOM05D001057 ORTHO05D003212 1.9e-12 75.9 73 54.8
AUR62016487 Chenopodium quinoa HOM05D001057 ORTHO05D003212 1.9e-12 75.9 73 54.8
THA.LOC104817981 Tarenaya hassleriana HOM05D001057 ORTHO05D003212 1.9e-12 75.9 63 63.5
COL.COLO4_30438 Corchorus olitorius HOM05D001057 ORTHO05D003212 2.4e-12 75.5 72 61.1
SGA_v2.0_scaffold68G22981 Striga asiatica HOM05D001057 ORTHO05D003212 2.4e-12 75.5 62 66.1
VMungo0331G1249 Vigna mungo HOM05D001057 ORTHO05D003212 2.4e-12 75.5 64 62.5
AUR62037812 Chenopodium quinoa HOM05D006463 ORTHO05D002997 3.2e-12 75.1 63 61.9
CsaV3_7G033430 Cucumis sativus L. HOM05D001057 ORTHO05D003212 3.2e-12 75.1 79 54.4
Gohir.A10G081400 Gossypium hirsutum HOM05D001057 ORTHO05D003212 5.4e-12 74.3 62 66.1
Duzib192G0225 Durio zibethinus HOM05D001057 ORTHO05D003212 9.3e-12 73.6 83 54.2
Sed0011200 Sechium edule HOM05D001057 ORTHO05D003212 1.2e-11 73.2 62 61.3
Solyc06g066620.4 Solanum lycopersicum HOM05D001057 ORTHO05D003212 1.6e-11 72.8 78 47.4
CAN.G1152.7 Capsicum annuum HOM05D001057 ORTHO05D003212 2.1e-11 72.4 89 44.9
MELO3C024257.2 Cucumis melo HOM05D001057 ORTHO05D003212 2.1e-11 72.4 79 51.9
BolC6t35834H Brassica oleracea HOM05D001057 ORTHO05D003212 2.7e-11 72.0 69 55.1
Thhalv10000365m.g Eutrema salsugineum HOM05D001057 ORTHO05D003212 2.7e-11 72.0 67 58.2
PGSC0003DMG400016532 Solanum tuberosum HOM05D001057 ORTHO05D003212 2.7e-11 72.0 85 47.1
Sp1g38760 Schrenkiella parvula HOM05D001057 ORTHO05D003212 3.5e-11 71.6 62 58.1
Sopen06g024890 Solanum pennellii HOM05D001057 ORTHO05D003212 3.5e-11 71.6 78 47.4
AL1G60390 Arabidopsis lyrata HOM05D001057 ORTHO05D003212 4.6e-11 71.2 61 62.3
Sed0022313 Sechium edule HOM05D001057 ORTHO05D003212 4.6e-11 71.2 62 58.1
ECA247G0981 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.0e-11 70.9 81 46.9
Nitab4.5_0003351g0010 Nicotiana tabacum HOM05D001057 ORTHO05D003212 6.0e-11 70.9 78 50.0
BraA06t23413Z Brassica rapa HOM05D001057 ORTHO05D003212 7.8e-11 70.5 64 57.8
CANSAT56G2785 Cannabis sativa HOM05D001057 ORTHO05D003212 7.8e-11 70.5 79 50.6
TWI12G1124 Tripterygium wilfordii HOM05D001057 ORTHO05D003212 7.8e-11 70.5 60 65.0
A06p01970 Brassica napus HOM05D001057 ORTHO05D003212 1.0e-10 70.1 66 54.5
Carub.0001s4119 Capsella rubella HOM05D001057 ORTHO05D003212 1.3e-10 69.7 60 58.3
SalBow2G2601 Salvia bowleyana HOM05D001577 ORTHO05D003311 1.3e-10 69.7 81 50.6
C06p07450 Brassica napus HOM05D001057 ORTHO05D003212 1.7e-10 69.3 66 54.5
Lalb_Chr25g0279981 Lupinus albus HOM05D001057 ORTHO05D003212 1.7e-10 69.3 64 60.9
MSTRG.4739 Avicennia marina HOM05D001057 ORTHO05D003212 3.0e-10 68.6 60 61.7
Nn3g18086 Nelumbo nucifera HOM05D001057 ORTHO05D003212 3.0e-10 68.6 59 57.6
Aa31LG10G2690 Aethionema arabicum HOM05D001057 ORTHO05D003212 5.1e-10 67.8 89 47.2
Migut.D01016 Erythranthe guttata HOM05D001057 ORTHO05D003212 5.1e-10 67.8 65 56.9
Nitab4.5_0000351g0110 Nicotiana tabacum HOM05D001057 ORTHO05D003212 8.7e-10 67.0 68 52.9
Peaxi162Scf00207g00944 Petunia axillaris HOM05D001057 ORTHO05D003212 1.1e-09 66.6 63 60.3
PSO210G1716 Papaver somniferum HOM05D001057 ORTHO05D003212 2.8e-08 62.0 68 52.9
PSO210G6925 Papaver somniferum HOM05D001057 ORTHO05D003212 2.8e-08 62.0 68 52.9
BcaC08g43378 Brassica carinata HOM05D001057 ORTHO05D003212 1.8e-07 59.3 53 54.7
Cc04_g03020 Coffea canephora HOM05D001057 ORTHO05D003212 1.8e-07 59.3 73 43.8
Lsat_1_v5_gn_1_35260 Lactuca sativa HOM05D001057 ORTHO05D003212 1.8e-07 59.3 81 43.2
HanXRQChr04g0096171 Helianthus annuus HOM05D001057 ORTHO05D003212 1.2e-06 56.6 67 47.8
SEGI_17981 Sequoiadendron giganteum HOM05D001057 ORTHO05D003212 9.9e-06 53.5 68 45.6


User provided reference genes

Program Settings