Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.5e-58 228.0 112 100.0
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-54 215.7 112 95.5
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-52 209.1 112 91.1
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-49 199.1 112 91.1
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.6e-42 174.9 87 97.7
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-42 174.1 112 81.2
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-41 171.8 87 94.3
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.7e-41 170.6 87 95.4
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.2e-34 149.8 86 82.6
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 2.1e-34 149.1 86 83.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 3.0e-33 145.2 92 76.1
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 6.3e-31 137.5 85 75.3
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 7.2e-27 124.0 89 66.3
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 6.1e-26 120.9 85 67.1
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.3e-25 119.0 85 64.7
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.3e-24 115.2 88 63.6
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.3e-24 115.2 87 63.2
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.7e-23 112.8 83 62.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.7e-23 112.8 83 62.7
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.2e-23 112.5 86 66.3
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 6.3e-23 110.9 86 64.0
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.1e-22 110.2 84 65.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.1e-22 108.6 77 66.2
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.6e-21 105.5 83 59.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.5e-21 105.1 93 57.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 3.5e-21 105.1 79 64.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 5.9e-21 104.4 76 61.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 7.7e-21 104.0 81 60.5
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 7.7e-21 104.0 76 68.4
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 2.2e-20 102.4 87 55.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.9e-20 102.1 85 61.2
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 2.9e-20 102.1 85 55.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.8e-20 101.7 90 57.8
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 8.5e-20 100.5 85 55.3
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 8.5e-20 100.5 83 56.6
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.5e-19 99.8 79 57.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.2e-19 98.6 87 51.7
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 4.2e-19 98.2 86 54.7
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.2e-18 96.7 83 56.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.2e-18 96.7 83 56.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.2e-18 96.7 83 56.6
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.6e-18 96.3 77 55.8
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.7e-18 94.7 93 51.6
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.1e-18 94.4 87 51.7
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 6.1e-18 94.4 86 59.3
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 6.1e-18 94.4 87 50.6
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.8e-17 92.8 81 56.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 4.0e-17 91.7 83 51.8
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 8.8e-17 90.5 87 46.0
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 8.8e-17 90.5 87 50.6
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.2e-16 90.1 85 49.4
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.5e-16 89.7 89 47.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.5e-16 89.7 93 46.2
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.6e-16 89.0 87 51.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.6e-16 89.0 88 52.3
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.4e-16 88.2 86 53.5
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 4.4e-16 88.2 74 59.5
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 7.5e-16 87.4 83 55.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 7.5e-16 87.4 87 50.6
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.2e-15 85.9 87 48.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 2.8e-15 85.5 87 50.6
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.7e-15 85.1 85 48.2
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.8e-15 84.7 87 48.3
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 6.3e-15 84.3 98 44.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 6.3e-15 84.3 83 54.2
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 6.3e-15 84.3 85 43.5
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.1e-14 83.6 93 48.4
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.8e-14 82.8 72 52.8
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.4e-14 82.4 81 53.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 7.0e-14 80.9 81 51.9
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 7.0e-14 80.9 87 42.5
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.7e-13 79.0 85 48.2
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 3.5e-13 78.6 87 41.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.0e-12 77.0 83 50.6
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.7e-12 76.3 73 50.7
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.7e-12 76.3 83 48.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.9e-12 75.5 90 45.6
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.9e-12 75.5 76 53.9
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 5.0e-12 74.7 97 45.4
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 8.5e-12 73.9 89 47.2
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-11 73.2 77 49.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-11 73.2 77 49.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.9e-11 72.8 82 48.8
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.9e-11 72.8 79 51.9
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.5e-11 72.4 95 42.1
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.2e-11 72.0 89 42.7
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 7.2e-11 70.9 86 46.5
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.2e-10 70.1 77 48.1
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 2.7e-10 68.9 81 48.1
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 8.0e-10 67.4 95 37.9
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 8.0e-10 67.4 83 48.2
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.4e-09 66.6 87 48.3
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.3e-09 65.9 77 44.2
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.0e-09 65.5 73 47.9
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 3.0e-09 65.5 87 44.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 5.2e-09 64.7 85 47.1
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 8.8e-09 63.9 83 38.6
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.7e-08 61.2 75 46.7
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 5.7e-08 61.2 97 37.1
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 9.8e-08 60.5 83 47.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.7e-07 59.7 73 47.9
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.1e-06 57.0 72 45.8
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.1e-06 57.0 72 45.8
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.1e-06 57.0 72 45.8


User provided reference genes

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