Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 4.2e-41 171.0 92 100.0
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.5e-33 146.0 94 84.0
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.5e-33 144.1 92 83.7
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.2e-32 142.9 96 84.4
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 9.7e-30 133.3 97 78.4
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.7e-29 131.3 92 80.4
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.1e-28 128.3 93 76.3
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.7e-27 125.2 94 74.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 4.5e-27 124.4 94 73.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.0e-26 123.2 93 76.3
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.3e-26 122.9 94 73.4
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.2e-26 122.1 93 71.0
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 6.5e-26 120.6 93 69.9
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 7.2e-25 117.1 93 71.0
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 9.4e-25 116.7 94 70.2
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.6e-24 115.9 93 72.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.1e-24 115.5 97 71.1
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 3.6e-24 114.8 94 69.1
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 4.7e-24 114.4 92 70.7
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 8.0e-24 113.6 99 69.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.4e-23 112.8 96 69.8
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.8e-23 112.5 92 69.6
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.8e-23 112.5 93 71.0
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 2.3e-23 112.1 93 68.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 2.3e-23 112.1 93 69.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 68.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 4.0e-23 111.3 96 69.8
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 4.0e-23 111.3 93 68.8
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 5.2e-23 110.9 90 68.9
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 8.8e-23 110.2 96 68.8
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 66.0
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 66.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 68.1
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.4e-22 108.2 98 67.3
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 3.4e-22 108.2 92 66.3
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 4.4e-22 107.8 94 63.8
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 62.8
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 69.1
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 2.8e-21 105.1 94 66.0
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.8e-21 104.4 85 69.4
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 4.8e-21 104.4 96 67.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.3e-21 104.0 83 71.1
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 61.7
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 62.8
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 62.8
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.8e-20 102.4 94 61.7
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.8e-20 102.4 94 62.8
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.8e-20 102.4 94 64.9
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 60.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 61.7
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 60.6
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 60.6
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 60.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 61.7
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 2.4e-20 102.1 94 60.6
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 3.1e-20 101.7 94 61.7
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 5.4e-20 100.9 92 67.4
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 9.1e-20 100.1 94 64.9
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 1.2e-19 99.8 118 55.1
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 1.2e-19 99.8 83 71.1
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.7e-19 98.6 93 66.7
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.5e-19 98.2 94 61.7
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 3.5e-19 98.2 94 63.8
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 4.5e-19 97.8 94 62.8
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 5.9e-19 97.4 82 68.3
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.0e-18 96.7 86 68.6
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.0e-18 96.7 82 70.7
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 3.8e-18 94.7 85 64.7
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 5.0e-18 94.4 131 48.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 6.5e-18 94.0 93 60.2
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 6.5e-18 94.0 92 63.0
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.1e-17 93.2 118 53.4
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.1e-17 93.2 83 61.4
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.9e-17 92.4 83 66.3
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.2e-17 91.7 87 66.7
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 5.5e-17 90.9 94 62.8
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.2e-16 89.7 83 63.9
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.6e-16 89.4 53 84.9
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.6e-16 89.4 78 69.2
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.1e-16 89.0 96 61.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.1e-16 89.0 82 65.9
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.1e-16 89.0 83 67.5
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.8e-16 88.6 87 64.4
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.6e-16 88.2 84 60.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 8.0e-16 87.0 83 60.2
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.8e-15 83.6 92 53.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 8.8e-15 83.6 86 57.0
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 8.8e-15 83.6 83 60.2
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 1.5e-14 82.8 51 80.4
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.0e-14 82.4 85 60.0
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.0e-14 82.4 51 80.4
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 2.0e-14 82.4 83 59.0
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.6e-14 82.0 93 57.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 4.4e-14 81.3 83 60.2
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 5.7e-14 80.9 83 56.6
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 9.8e-14 80.1 51 82.4
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 9.8e-14 80.1 47 87.2
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.3e-13 77.4 81 55.6
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.4e-12 76.3 92 50.0
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 2.7e-11 72.0 83 56.6
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 5.9e-11 70.9 102 43.1
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 3.8e-10 68.2 104 44.2
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.8e-10 68.2 53 67.9
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 5.0e-10 67.8 88 50.0
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-09 66.6 106 42.5
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-09 66.6 106 42.5
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.1e-09 66.6 106 42.5
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.9e-09 65.9 106 44.3
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 2.5e-09 65.5 94 45.7
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.3e-09 65.1 108 44.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.5e-09 63.5 98 44.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.8e-08 62.0 88 40.9
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.8e-08 62.0 94 43.6
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 3.6e-08 61.6 85 45.9
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 3.6e-08 61.6 85 45.9
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.6e-08 61.6 65 52.3
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 4.7e-08 61.2 101 42.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 4.7e-08 61.2 91 42.9
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.7e-08 61.2 98 43.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.7e-08 61.2 98 43.9
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.7e-08 61.2 105 41.9
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 8.0e-08 60.5 88 42.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 8.0e-08 60.5 99 39.4
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.0e-08 60.5 89 44.9
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 8.0e-08 60.5 83 43.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.0e-07 60.1 86 44.2
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.0e-07 60.1 83 47.0
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.4e-07 59.7 86 45.3
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.4e-07 59.7 103 44.7
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.4e-07 59.7 91 42.9
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.4e-07 59.7 96 41.7
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.8e-07 59.3 101 41.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.8e-07 59.3 101 41.6
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.8e-07 59.3 93 41.9
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 1.8e-07 59.3 45 75.6
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.3e-07 58.9 86 45.3
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.3e-07 58.9 86 45.3
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.3e-07 58.9 91 42.9
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.3e-07 58.9 92 43.5
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.3e-07 58.9 83 43.4
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 3.0e-07 58.5 65 47.7
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.0e-07 58.5 94 39.4
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.0e-07 58.2 86 45.3
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 5.2e-07 57.8 60 50.0
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 5.2e-07 57.8 103 42.7
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 5.2e-07 57.8 66 47.0
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.2e-07 57.8 66 47.0
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 6.8e-07 57.4 92 47.8
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 8.9e-07 57.0 81 46.9
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 8.9e-07 57.0 93 46.2
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 8.9e-07 57.0 47 59.6
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 8.9e-07 57.0 47 59.6
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 1.2e-06 56.6 85 43.5
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 1.2e-06 56.6 96 42.7
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.5e-06 56.2 90 44.4
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.5e-06 56.2 92 44.6
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 1.5e-06 56.2 93 44.1
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.6e-06 55.5 77 48.1
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 3.4e-06 55.1 90 48.9
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.4e-06 55.1 93 43.0
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 3.4e-06 55.1 87 44.8
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 4.4e-06 54.7 97 39.2
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 4.4e-06 54.7 64 48.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 5.7e-06 54.3 63 46.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.5e-06 53.9 72 44.4
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 9.8e-06 53.5 95 37.9
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 9.8e-06 53.5 71 49.3


User provided reference genes

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