Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002956 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 7.3e-125 450.7 244 100.0
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.4e-105 384.4 247 88.3
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 2.4e-104 382.5 252 84.5
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.8e-102 376.3 249 85.9
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.7e-102 374.4 252 83.7
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.7e-102 374.4 252 83.7
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.2e-97 359.4 246 85.0
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.8e-97 358.6 254 80.3
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.5e-87 325.5 244 79.9
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.1e-22 111.3 62 91.9
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 2.1e-18 97.1 66 83.3
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.3e-17 94.4 65 83.1
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.5e-16 90.9 65 80.0
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.5e-16 90.1 65 76.9
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 2.5e-16 90.1 65 80.0
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 4.3e-16 89.4 88 59.1
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 5.6e-16 89.0 64 79.7
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 1.2e-15 87.8 66 80.3
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.6e-15 87.4 65 76.9
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 3.6e-15 86.3 65 78.5
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 4.7e-15 85.9 91 62.6
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 8.1e-15 85.1 65 78.5
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.1e-15 85.1 65 76.9
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 8.1e-15 85.1 66 75.8
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 1.4e-14 84.3 67 73.1
CSS0007594 Camellia sinensis var. sinensis HOM05D038181 ORTHO05D033864 1.8e-14 84.0 82 56.1
CSS0013279 Camellia sinensis var. sinensis HOM05D038181 ORTHO05D033864 1.8e-14 84.0 82 56.1
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.1e-14 83.2 65 75.4
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.1e-14 83.2 66 75.8
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 4.0e-14 82.8 67 76.1
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 5.2e-14 82.4 66 75.8
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 6.8e-14 82.0 66 75.8
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 6.8e-14 82.0 66 74.2
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 8.9e-14 81.6 70 71.4
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 8.9e-14 81.6 65 75.4
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 8.9e-14 81.6 89 56.2
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 8.9e-14 81.6 69 73.9
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 8.9e-14 81.6 69 73.9
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 8.9e-14 81.6 65 72.3
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 8.9e-14 81.6 65 73.8
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 8.9e-14 81.6 66 69.7
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 8.9e-14 81.6 66 69.7
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 8.9e-14 81.6 66 69.7
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.2e-13 81.3 66 74.2
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.2e-13 81.3 66 69.7
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 1.2e-13 81.3 62 75.8
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.5e-13 80.9 89 60.7
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.0e-13 80.5 65 72.3
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 2.6e-13 80.1 55 76.4
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 3.4e-13 79.7 104 50.0
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 3.4e-13 79.7 66 68.2
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 3.4e-13 79.7 66 68.2
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 4.4e-13 79.3 95 56.8
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 4.4e-13 79.3 55 80.0
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 4.4e-13 79.3 65 73.8
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 4.4e-13 79.3 55 80.0
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 4.4e-13 79.3 62 75.8
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 5.8e-13 79.0 66 77.3
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 5.8e-13 79.0 57 77.2
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 5.8e-13 79.0 93 53.8
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 5.8e-13 79.0 65 73.8
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 9.9e-13 78.2 65 64.6
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 9.9e-13 78.2 89 50.6
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 9.9e-13 78.2 65 70.8
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.3e-12 77.8 56 76.8
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 1.3e-12 77.8 65 64.6
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 1.3e-12 77.8 63 76.2
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 1.7e-12 77.4 66 62.1
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 1.7e-12 77.4 70 70.0
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-12 77.4 67 68.7
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 1.7e-12 77.4 72 66.7
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 1.7e-12 77.4 85 50.6
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 2.2e-12 77.0 54 75.9
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.2e-12 77.0 100 52.0
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 2.9e-12 76.6 64 76.6
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 2.9e-12 76.6 56 80.4
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.9e-12 76.6 66 72.7
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.9e-12 76.6 66 72.7
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.9e-12 76.6 66 72.7
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.9e-12 76.6 66 68.2
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 3.7e-12 76.3 55 67.3
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.7e-12 76.3 67 67.2
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 3.7e-12 76.3 54 70.4
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 4.9e-12 75.9 96 45.8
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 4.9e-12 75.9 93 52.7
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 4.9e-12 75.9 93 52.7
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 4.9e-12 75.9 55 67.3
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 4.9e-12 75.9 73 64.4
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 6.4e-12 75.5 67 61.2
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 6.4e-12 75.5 70 64.3
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 6.4e-12 75.5 55 80.0
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.3e-12 75.1 67 67.2
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 8.3e-12 75.1 95 51.6
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 8.3e-12 75.1 95 51.6
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.1e-11 74.7 67 70.1
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 1.9e-11 73.9 65 61.5
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 1.9e-11 73.9 66 71.2
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.4e-11 73.6 59 69.5
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 2.4e-11 73.6 63 65.1
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 2.4e-11 73.6 93 54.8
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.4e-11 73.6 65 70.8
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.2e-11 73.2 61 72.1
TAR628G1031 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.2e-11 73.2 200 40.0
TAR628G1738 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.2e-11 73.2 200 40.0
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.1e-11 72.8 56 71.4
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 4.1e-11 72.8 91 54.9
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 5.4e-11 72.4 70 64.3
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 5.4e-11 72.4 89 55.1
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 7.1e-11 72.0 54 74.1
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 9.2e-11 71.6 69 65.2
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 9.2e-11 71.6 69 65.2
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 9.2e-11 71.6 70 57.1
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.2e-10 71.2 94 47.9
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 1.2e-10 71.2 56 71.4
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.6e-10 70.9 61 68.9
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 2.7e-10 70.1 57 73.7
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 2.7e-10 70.1 57 73.7
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 2.7e-10 70.1 89 49.4
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 3.5e-10 69.7 61 68.9
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 4.6e-10 69.3 54 75.9
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 6.0e-10 68.9 62 64.5
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.0e-09 68.2 114 41.2
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 1.3e-09 67.8 54 64.8
Lj2A449T51 Lonicera japonica HOM05D000401 ORTHO05D000252 1.3e-09 67.8 194 37.1
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 3.0e-09 66.6 64 59.4
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 5.1e-09 65.9 63 60.3
Nn5g29550 Nelumbo nucifera HOM05D000401 ORTHO05D000252 6.6e-09 65.5 237 34.6
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 6.6e-09 65.5 57 63.2
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 1.5e-08 64.3 57 63.2
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.5e-08 64.3 68 57.4
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 1.5e-08 64.3 76 57.9
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 1.5e-08 64.3 83 51.8
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 1.9e-08 63.9 56 64.3
FvH4_1g13640 Fragaria vesca HOM05D000401 ORTHO05D000252 1.9e-08 63.9 123 41.5
FAN19G2628 Fragaria x ananassa HOM05D000401 ORTHO05D000252 1.9e-08 63.9 123 41.5
FAN26G0682 Fragaria x ananassa HOM05D000401 ORTHO05D000252 1.9e-08 63.9 123 41.5
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 1.9e-08 63.9 92 48.9
Cpa.g.c30864 Carica papaya HOM05D000401 ORTHO05D000252 3.3e-08 63.2 135 41.5
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 4.3e-08 62.8 95 45.3
Dinv39966 Davidia involucrata HOM05D038181 ORTHO05D000252 4.3e-08 62.8 124 40.3
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 4.3e-08 62.8 57 61.4
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 9.5e-08 61.6 56 60.7
FAN28G2367 Fragaria x ananassa HOM05D000401 ORTHO05D000252 1.2e-07 61.2 123 41.5
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 2.8e-07 60.1 67 56.7
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 2.8e-07 60.1 57 59.6
TAR376G0096 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.6e-07 59.7 134 35.8
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 4.7e-07 59.3 59 57.6
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 4.7e-07 59.3 89 43.8
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 6.2e-07 58.9 59 57.6
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 6.2e-07 58.9 67 56.7
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 1.4e-06 57.8 112 43.8
Prupe.7G152000 Prunus persica HOM05D000401 ORTHO05D000252 1.8e-06 57.4 92 43.5
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 3.1e-06 56.6 64 54.7
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 3.1e-06 56.6 64 57.8
TWI09G1341 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 4.0e-06 56.2 207 30.4
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 5.2e-06 55.8 61 54.1
Ciclev10025709m.g Citrus clementina HOM05D000401 ORTHO05D000252 6.8e-06 55.5 102 38.2
Gohir.A05G392150 Gossypium hirsutum HOM05D003827 ORTHO05D004518 6.8e-06 55.5 47 70.2
Gohir.D04G024950 Gossypium hirsutum HOM05D003827 ORTHO05D004518 6.8e-06 55.5 47 72.3
Gorai.012G027500 Gossypium raimondii HOM05D003827 ORTHO05D004518 6.8e-06 55.5 47 72.3
MD15G1265600 Malus domestica HOM05D000401 ORTHO05D000252 8.9e-06 55.1 124 39.5


User provided reference genes

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