Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002941 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D113307 3.2e-27 124.4 66 100.0
CSS0044987 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 1.5e-11 72.4 103 46.6
CSS0020640 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 5.6e-11 70.5 103 45.6
Nitab4.5_0000128g0320 Nicotiana tabacum HOM05D000386 ORTHO05D000406 1.0e-09 66.2 103 41.7
Nitab4.5_0005282g0020 Nicotiana tabacum HOM05D000386 ORTHO05D000406 1.0e-09 66.2 103 41.7
Nitab4.5_0008262g0010 Nicotiana tabacum HOM05D000386 ORTHO05D000406 1.0e-09 66.2 103 41.7
Peaxi162Scf00044g01112 Petunia axillaris HOM05D000386 ORTHO05D000406 1.0e-09 66.2 103 41.7
Peaxi162Scf00295g01129 Petunia axillaris HOM05D000386 ORTHO05D000406 1.0e-09 66.2 103 41.7
CAN.G151.15 Capsicum annuum HOM05D000386 ORTHO05D000406 2.3e-09 65.1 103 40.8
Dinv13218 Davidia involucrata HOM05D000386 ORTHO05D000406 2.3e-09 65.1 103 41.7
TWI53G0591 Tripterygium wilfordii HOM05D000386 ORTHO05D000406 2.3e-09 65.1 103 42.7
Atru.chr3.1365 Acer truncatum HOM05D000386 ORTHO05D000406 3.1e-09 64.7 103 40.8
Hund28655 Selenicereus undatus HOM05D000386 ORTHO05D000406 3.1e-09 64.7 72 50.0
Hund28658 Selenicereus undatus HOM05D000386 ORTHO05D000406 3.1e-09 64.7 72 50.0
Actinidia06548 Actinidia chinensis HOM05D000386 ORTHO05D000406 5.2e-09 63.9 103 41.7
Duzib147G0799 Durio zibethinus HOM05D000386 ORTHO05D000406 6.8e-09 63.5 103 41.7
CANSAT01G1784 Cannabis sativa HOM05D000386 ORTHO05D000406 1.2e-08 62.8 103 39.8
Oeu056625.1 Olea europaea HOM05D000386 ORTHO05D000406 1.2e-08 62.8 103 40.8
TWI53G2018 Tripterygium wilfordii HOM05D000386 ORTHO05D000406 1.2e-08 62.8 103 41.7
Peaxi162Scf00016g02622 Petunia axillaris HOM05D000386 ORTHO05D000406 1.5e-08 62.4 103 38.8
Peaxi162Scf00016g02633 Petunia axillaris HOM05D000386 ORTHO05D000406 1.5e-08 62.4 103 38.8
QL06p048394 Quercus lobata HOM05D000386 ORTHO05D000406 1.5e-08 62.4 103 40.8
PGSC0003DMG400016797 Solanum tuberosum HOM05D000386 ORTHO05D000406 1.5e-08 62.4 103 38.8
CiPaw.03G144600 Carya illinoinensis HOM05D000386 ORTHO05D000406 2.0e-08 62.0 103 39.8
CiPaw.03G144400 Carya illinoinensis HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 38.8
Gorai.007G234000 Gossypium raimondii HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 40.8
Thecc.01G097200 Theobroma cacao HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 39.8
Thecc.01G097400 Theobroma cacao HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 39.8
TAR381G0481 Trochodendron aralioides HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 39.8
vmacro12973 Vaccinium macrocarpon HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 39.8
vmacro12974 Vaccinium macrocarpon HOM05D000386 ORTHO05D000406 2.6e-08 61.6 103 39.8
Haze_24869 Corylus avellana HOM05D000386 ORTHO05D000406 3.4e-08 61.2 103 40.8
Haze_24878 Corylus avellana HOM05D000386 ORTHO05D000406 3.4e-08 61.2 103 40.8
Duzib264G0969 Durio zibethinus HOM05D000386 ORTHO05D000406 3.4e-08 61.2 103 39.8
MD00G1036800 Malus domestica HOM05D000386 ORTHO05D000406 4.4e-08 60.8 103 39.8
PGR004G2622 Punica granatum HOM05D000386 ORTHO05D000406 4.4e-08 60.8 103 38.8
TAR628G1740 Trochodendron aralioides HOM05D000386 ORTHO05D000406 4.4e-08 60.8 103 40.8
Actinidia06546 Actinidia chinensis HOM05D000386 ORTHO05D000406 5.8e-08 60.5 103 40.8
Haze_24844 Corylus avellana HOM05D000386 ORTHO05D000406 5.8e-08 60.5 103 40.8
Eucgr.I00521 Eucalyptus grandis HOM05D000386 ORTHO05D000406 5.8e-08 60.5 101 40.6
Eucgr.I00523 Eucalyptus grandis HOM05D000386 ORTHO05D000406 5.8e-08 60.5 103 39.8
Gohir.A11G203800 Gossypium hirsutum HOM05D000386 ORTHO05D000406 5.8e-08 60.5 103 40.8
Rhsim10G0166700 Rhododendron simsii HOM05D000386 ORTHO05D000406 5.8e-08 60.5 103 38.8
TAR381G1476 Trochodendron aralioides HOM05D000386 ORTHO05D000406 5.8e-08 60.5 103 39.8
Ciclev10025117m.g Citrus clementina HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
COL.COLO4_27279 Corchorus olitorius HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
FvH4_1g20390 Fragaria vesca HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
FAN23G1475 Fragaria x ananassa HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
FAN26G1656 Fragaria x ananassa HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
FAN28G0374 Fragaria x ananassa HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
Prupe.6G191500 Prunus persica HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 39.8
Rhsim10G0166200 Rhododendron simsii HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
RhsimUnG0068800 Rhododendron simsii HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 38.8
RhsimUnG0191900 Rhododendron simsii HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 37.9
TAR628G0380 Trochodendron aralioides HOM05D000386 ORTHO05D000406 7.5e-08 60.1 103 39.8
MSTRG.3766 Avicennia marina HOM05D000386 ORTHO05D000406 9.8e-08 59.7 103 38.8
Gohir.D11G219600 Gossypium hirsutum HOM05D000386 ORTHO05D000406 9.8e-08 59.7 103 39.8
Potri.005G073100 Populus trichocarpa HOM05D000386 ORTHO05D000406 9.8e-08 59.7 103 38.8
QL06p048414 Quercus lobata HOM05D000386 ORTHO05D000406 9.8e-08 59.7 103 38.8
RcHm_v2.0_Chr2g0112631 Rosa chinensis HOM05D000386 ORTHO05D000406 1.3e-07 59.3 103 38.8
Solyc05g051530.4 Solanum lycopersicum HOM05D000386 ORTHO05D000406 1.3e-07 59.3 103 38.8
GSVIVG01002136001 Vitis vinifera HOM05D000386 ORTHO05D000406 1.3e-07 59.3 103 39.8
Cfa002620 Carpinus fangiana HOM05D000386 ORTHO05D000406 1.7e-07 58.9 103 39.8
GSVIVG01003413001 Vitis vinifera HOM05D000386 ORTHO05D000406 1.7e-07 58.9 103 38.8
Ah.03g143960 Amaranthus hybridus HOM05D000386 ORTHO05D000406 2.2e-07 58.5 103 38.8
Lj2A542G30 Lonicera japonica HOM05D000386 ORTHO05D000406 2.2e-07 58.5 101 38.6
Eucgr.I00526 Eucalyptus grandis HOM05D000386 ORTHO05D000406 2.9e-07 58.2 103 38.8
Nn1g05424 Nelumbo nucifera HOM05D000386 ORTHO05D000406 2.9e-07 58.2 103 37.9
Hund30838 Selenicereus undatus HOM05D000386 ORTHO05D000406 2.9e-07 58.2 103 36.9
Hund30839 Selenicereus undatus HOM05D000386 ORTHO05D000406 2.9e-07 58.2 103 36.9
Gohir.A11G203700 Gossypium hirsutum HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 39.8
Gorai.007G236200 Gossypium raimondii HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 39.8
Rhsim10G0165900 Rhododendron simsii HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 37.9
Rhsim10G0166600 Rhododendron simsii HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 36.9
RcHm_v2.0_Chr2g0112551 Rosa chinensis HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 37.9
SHI13686 Sapria himalayana HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 36.9
PGSC0003DMG400016225 Solanum tuberosum HOM05D000386 ORTHO05D000406 3.7e-07 57.8 103 37.9
AUR62003822 Chenopodium quinoa HOM05D000386 ORTHO05D000406 4.9e-07 57.4 103 38.8
Manes.12G131400 Manihot esculenta HOM05D000386 ORTHO05D000406 4.9e-07 57.4 103 38.8
Solyc11g009100.2 Solanum lycopersicum HOM05D000386 ORTHO05D000406 4.9e-07 57.4 103 37.9
CiPaw.03G144500 Carya illinoinensis HOM05D000386 ORTHO05D000406 6.4e-07 57.0 103 36.9
Nn5g30030 Nelumbo nucifera HOM05D000386 ORTHO05D000406 6.4e-07 57.0 103 37.9
Potri.005G073050 Populus trichocarpa HOM05D000386 ORTHO05D000406 6.4e-07 57.0 101 38.6
RcHm_v2.0_Chr2g0112561 Rosa chinensis HOM05D000386 ORTHO05D000406 6.4e-07 57.0 103 37.9
CAN.G905.31 Capsicum annuum HOM05D000386 ORTHO05D000406 8.3e-07 56.6 103 35.9
Gohir.D11G219900 Gossypium hirsutum HOM05D000386 ORTHO05D000406 8.3e-07 56.6 103 38.8
Nn7g37673 Nelumbo nucifera HOM05D000386 ORTHO05D000406 8.3e-07 56.6 103 37.9
RcHm_v2.0_Chr2g0112641 Rosa chinensis HOM05D000386 ORTHO05D000406 8.3e-07 56.6 101 38.6
Sopen05g029950 Solanum pennellii HOM05D000386 ORTHO05D000406 8.3e-07 56.6 103 37.9
Sopen05g029960 Solanum pennellii HOM05D000386 ORTHO05D000406 8.3e-07 56.6 103 37.9
CSS0006829 Camellia sinensis var. sinensis HOM05D000386 ORTHO05D000406 1.4e-06 55.8 88 42.0
CDE04G1886 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 1.4e-06 55.8 103 37.9
CDE06G0211 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 1.4e-06 55.8 103 37.9
Lj2A541T61 Lonicera japonica HOM05D000386 ORTHO05D000406 1.4e-06 55.8 103 35.9
MBI05_g11986_MAGBIO Magnolia biondii HOM05D000386 ORTHO05D000406 1.4e-06 55.8 103 36.9
Sopen11g004890 Solanum pennellii HOM05D000386 ORTHO05D000406 1.4e-06 55.8 101 37.6
QL06p048423 Quercus lobata HOM05D000386 ORTHO05D000406 1.9e-06 55.5 103 37.9
Ciclev10025064m.g Citrus clementina HOM05D000386 ORTHO05D000406 2.4e-06 55.1 103 36.9
FAN19G0134 Fragaria x ananassa HOM05D000386 ORTHO05D000406 3.2e-06 54.7 103 36.9
MBI05_g11987_MAGBIO Magnolia biondii HOM05D000386 ORTHO05D000406 3.2e-06 54.7 103 36.9
RhsimUnG0188100 Rhododendron simsii HOM05D000386 ORTHO05D000406 4.1e-06 54.3 103 35.9
SGA_v2.0_scaffold335G49106 Striga asiatica HOM05D000386 ORTHO05D000406 4.1e-06 54.3 103 35.0
Actinidia20000 Actinidia chinensis HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 38.8
EL10Ac6g15139 Beta vulgaris HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 35.9
Dinv08844 Davidia involucrata HOM05D000386 ORTHO05D000406 7.0e-06 53.5 31 83.9
FvH4_1g20410 Fragaria vesca HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 35.9
FAN19G2315 Fragaria x ananassa HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 35.9
FAN26G1333 Fragaria x ananassa HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 35.9
Nn5g30031 Nelumbo nucifera HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 36.9
PSO541G2660 Papaver somniferum HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 35.9
Sabra17G0038100 Salix brachista HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 36.9
Sabra17G0042700 Salix brachista HOM05D000386 ORTHO05D000406 7.0e-06 53.5 103 36.9
Nitab4.5_0000241g0220 Nicotiana tabacum HOM05D000386 ORTHO05D000406 9.2e-06 53.1 101 35.6
Nitab4.5_0002604g0010 Nicotiana tabacum HOM05D000386 ORTHO05D000406 9.2e-06 53.1 101 35.6
PSO675G1428 Papaver somniferum HOM05D000386 ORTHO05D000406 9.2e-06 53.1 103 36.9


User provided reference genes

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