Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 9.2e-156 553.5 280 100.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.0e-154 547.7 280 98.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-150 536.6 289 95.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-147 526.6 269 98.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 5.8e-118 427.9 279 78.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.2e-109 399.4 280 76.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.3e-104 383.6 280 71.4
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.5e-102 375.2 282 70.9
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.0e-101 374.0 281 69.8
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.2e-101 372.9 281 71.2
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 5.5e-100 368.2 259 72.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.7e-99 365.9 280 69.3
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 7.9e-99 364.4 274 70.1
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.9e-98 362.1 278 70.1
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 8.7e-98 360.9 271 70.5
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.1e-97 360.5 280 71.1
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 5.7e-97 358.2 282 68.1
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.6e-96 356.7 268 68.3
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.6e-96 356.7 279 68.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 4.8e-96 355.1 277 66.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.4e-95 353.6 278 68.0
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.4e-95 353.6 270 68.1
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 3.1e-95 352.4 255 70.6
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.1e-95 352.4 277 66.1
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.1e-95 352.1 279 66.3
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 5.3e-95 351.7 279 67.4
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 6.9e-95 351.3 257 70.0
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.9e-95 351.3 213 82.2
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 6.9e-95 351.3 245 72.7
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.2e-94 350.5 288 66.0
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.0e-94 349.7 226 77.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.0e-94 349.7 257 70.4
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-94 349.7 280 66.1
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 3.4e-94 349.0 280 65.7
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.5e-94 348.6 223 77.6
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.9e-94 348.2 275 64.7
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 5.9e-94 348.2 280 66.4
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.0e-93 347.4 252 73.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.3e-93 347.1 257 70.0
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.9e-93 345.9 273 66.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.9e-93 345.9 281 66.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.4e-92 343.6 275 66.9
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.2e-92 342.0 265 64.9
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 7.2e-92 341.3 258 70.5
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.2e-91 340.5 247 68.4
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-91 340.5 230 74.3
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.7e-91 339.3 267 66.3
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 6.1e-91 338.2 276 66.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.1e-91 338.2 262 67.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.3e-90 336.3 207 78.7
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 2.3e-90 336.3 282 64.5
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.9e-90 335.5 282 63.5
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 3.9e-90 335.5 270 66.7
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.7e-90 334.7 275 66.9
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 7.4e-89 331.3 228 73.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 9.7e-89 330.9 284 63.7
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 9.7e-89 330.9 284 63.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-88 330.5 271 62.7
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.2e-88 329.7 275 63.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.3e-88 328.2 246 69.5
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 6.3e-88 328.2 200 81.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 8.2e-88 327.8 269 66.2
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.4e-87 327.0 244 68.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 3.1e-87 325.9 199 81.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 5.3e-87 325.1 274 63.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 6.9e-87 324.7 240 69.2
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.0e-86 323.2 273 64.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 7.7e-86 321.2 199 79.9
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.0e-85 320.9 276 64.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.3e-85 320.5 235 71.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.7e-85 320.1 199 80.9
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.7e-85 320.1 223 71.7
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.0e-85 318.5 199 79.9
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.0e-85 318.5 270 63.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 5.0e-85 318.5 272 63.6
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 6.5e-85 318.2 272 62.1
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 8.5e-85 317.8 263 65.0
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 8.5e-85 317.8 272 64.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 8.5e-85 317.8 267 65.2
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.1e-84 317.4 233 68.2
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.4e-84 317.0 275 62.5
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.4e-84 317.0 234 70.5
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.9e-84 316.6 281 63.0
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.5e-84 316.2 224 73.2
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 3.2e-84 315.8 210 77.6
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 5.5e-84 315.1 274 64.2
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.5e-84 315.1 200 77.5
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 5.5e-84 315.1 249 65.5
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.2e-83 313.9 255 65.1
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.7e-83 312.8 239 68.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 7.9e-83 311.2 258 65.9
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.4e-82 310.5 279 64.2
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.8e-82 310.1 277 63.5
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.8e-82 310.1 288 60.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.3e-82 309.7 247 68.0
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.1e-82 308.5 246 67.9
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 8.8e-82 307.8 274 63.9
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.1e-81 307.4 240 69.2
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.1e-81 307.4 196 79.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.5e-81 307.0 182 85.2
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.4e-81 304.7 204 76.0
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 7.4e-81 304.7 201 77.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 7.4e-81 304.7 205 77.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 7.4e-81 304.7 201 77.6
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.7e-81 304.3 227 69.6
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.7e-80 303.5 202 76.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 4.8e-80 302.0 205 76.6
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 6.3e-80 301.6 177 84.7
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.1e-79 300.8 183 84.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.5e-78 295.4 193 75.1
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 4.5e-78 295.4 193 77.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.1e-76 290.8 221 67.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.5e-76 290.4 189 75.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.2e-76 288.9 243 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.7e-75 286.2 202 71.3
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.0e-74 284.3 202 68.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.4e-74 283.9 207 69.1
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 6.7e-74 281.6 200 70.5
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 8.2e-72 274.6 193 75.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.8e-71 273.5 238 60.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 4.1e-71 272.3 205 66.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.7e-70 268.1 179 73.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 9.4e-68 261.2 279 55.9
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 5.2e-66 255.4 244 55.7
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 5.2e-66 255.4 243 57.2
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 5.7e-65 251.9 165 73.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 5.7e-65 251.9 165 73.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.1e-63 246.1 259 56.4
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 8.5e-61 238.0 235 52.8
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.7e-59 233.0 171 71.9
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 3.0e-58 229.6 183 65.0
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 2.4e-55 219.9 269 49.4
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.0e-50 204.5 131 74.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 5.2e-50 202.2 192 59.4
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 5.0e-45 185.7 111 81.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-43 181.0 202 46.5
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.8e-43 179.9 112 79.5
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.4e-41 172.6 178 50.6
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 7.0e-39 165.2 93 84.9
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-36 157.9 217 47.0
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.5e-33 147.5 211 46.0
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.4e-33 146.0 88 78.4
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.5e-25 120.9 210 35.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.5e-25 120.9 156 42.9
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.5e-25 120.9 142 50.7
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.6e-25 120.2 137 48.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.2e-24 117.1 189 39.2
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 2.4e-23 113.6 70 77.1
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 7.8e-22 108.6 205 35.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 7.3e-20 102.1 149 39.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.6e-19 100.9 202 34.2
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.5e-14 83.2 66 60.6
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 7.8e-14 82.0 65 60.0
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.3e-12 75.5 113 45.1
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 7.6e-09 65.5 67 59.7
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 2.9e-08 63.5 38 78.9


User provided reference genes

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