Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.4e-30 132.9 61 100.0
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.4e-23 110.9 61 86.9
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.7e-19 96.3 48 93.8
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 4.3e-18 94.0 48 91.7
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.6e-15 84.7 43 88.4
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 4.5e-15 84.0 40 92.5
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.5e-15 84.0 40 92.5
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.5e-15 84.0 40 92.5
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.5e-15 84.0 40 92.5
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 4.5e-15 84.0 40 92.5
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.3e-14 82.4 40 90.0
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.3e-14 82.4 40 90.0
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.2e-14 81.6 37 97.3
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 2.9e-14 81.3 40 87.5
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 2.9e-14 81.3 39 89.7
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 3.8e-14 80.9 40 87.5
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 5.0e-14 80.5 39 89.7
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 5.0e-14 80.5 39 89.7
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 5.0e-14 80.5 40 87.5
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 5.0e-14 80.5 40 87.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 5.0e-14 80.5 40 87.5
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 6.5e-14 80.1 40 85.0
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 6.5e-14 80.1 40 87.5
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 8.5e-14 79.7 39 89.7
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 8.5e-14 79.7 39 89.7
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.1e-13 79.3 38 89.5
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.1e-13 79.3 38 89.5
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 1.1e-13 79.3 38 89.5
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.4e-13 79.0 40 87.5
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 2.5e-13 78.2 39 89.7
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 3.2e-13 77.8 40 87.5
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.2e-13 77.8 39 87.2
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 7.2e-13 76.6 40 85.0
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.2e-12 75.9 37 83.8
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 1.2e-12 75.9 40 82.5
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 2.1e-12 75.1 39 84.6
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 2.1e-12 75.1 40 82.5
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 2.1e-12 75.1 40 82.5
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.7e-12 74.7 39 82.1
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 2.7e-12 74.7 39 84.6
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 4.6e-12 73.9 39 82.1
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 1.0e-11 72.8 40 82.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 1.0e-11 72.8 37 83.8
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 1.0e-11 72.8 37 83.8
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 1.0e-11 72.8 36 86.1
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.0e-11 72.8 40 77.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 1.4e-11 72.4 40 82.5
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.4e-11 72.4 41 80.5
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 1.4e-11 72.4 40 82.5
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 1.4e-11 72.4 36 83.3
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 1.8e-11 72.0 40 82.5
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 2.3e-11 71.6 36 86.1
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.3e-11 71.6 40 80.0
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 2.3e-11 71.6 39 79.5
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 3.0e-11 71.2 40 80.0
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 3.0e-11 71.2 36 80.6
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.9e-11 70.9 41 78.0
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 3.9e-11 70.9 39 79.5
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.9e-11 70.9 39 79.5
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 3.9e-11 70.9 35 85.7
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 5.1e-11 70.5 36 83.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 5.1e-11 70.5 36 80.6
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 5.1e-11 70.5 40 77.5
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 1.1e-10 69.3 39 79.5
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.1e-10 69.3 35 82.9
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.5e-10 68.9 40 77.5
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 1.5e-10 68.9 39 76.9
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 1.5e-10 68.9 39 76.9
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.5e-10 68.9 41 75.6
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.0e-10 68.6 40 75.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 4.4e-10 67.4 41 73.2
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 4.4e-10 67.4 41 73.2
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 4.4e-10 67.4 40 75.0
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 5.7e-10 67.0 40 75.0
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 5.7e-10 67.0 41 73.2
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 9.7e-10 66.2 37 73.0
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 9.7e-10 66.2 39 76.9
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 1.3e-09 65.9 41 70.7
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.3e-09 65.9 37 73.0
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 1.3e-09 65.9 39 71.8
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.7e-09 65.5 40 72.5
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.7e-09 65.5 40 72.5
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.7e-09 65.5 40 72.5
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 2.2e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 2.8e-09 64.7 40 70.0
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 2.8e-09 64.7 40 70.0
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 2.8e-09 64.7 40 70.0
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 2.8e-09 64.7 40 70.0
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 4.8e-09 63.9 35 82.9
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 4.8e-09 63.9 39 76.9
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 8.2e-09 63.2 41 73.2
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 9.1e-08 59.7 41 65.9
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.3e-06 55.8 39 69.2
CSS0039373 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D110895 8.5e-06 53.1 27 92.6


User provided reference genes

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