Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.5e-228 795.0 388 100.0
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.5e-214 748.0 368 98.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-199 699.9 366 92.1
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.9e-199 699.1 362 92.0
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 4.0e-194 681.4 361 89.2
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.0e-194 681.4 366 88.8
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 9.3e-191 670.2 385 84.9
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 6.0e-190 667.5 362 87.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.9e-188 662.5 368 88.9
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.6e-187 659.4 368 86.1
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.1e-186 655.2 363 86.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.1e-186 655.2 363 85.7
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.5e-185 652.9 363 85.4
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 6.5e-184 647.5 385 82.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 6.5e-184 647.5 366 84.4
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.1e-183 646.7 366 84.2
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.4e-183 646.4 359 85.8
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.4e-183 646.4 357 84.6
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.9e-183 646.0 357 84.3
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.2e-183 644.8 365 83.8
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 7.2e-183 644.0 363 83.5
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.2e-183 644.0 361 84.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 9.4e-183 643.7 364 83.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.4e-183 643.7 365 83.0
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.6e-182 642.9 357 84.6
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.1e-182 642.5 363 83.2
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.1e-182 642.5 368 82.6
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.7e-182 642.1 365 82.7
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.6e-182 641.7 357 83.8
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 7.9e-182 640.6 363 82.4
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.4e-181 639.8 368 82.1
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.4e-181 639.8 359 83.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.4e-181 639.8 367 82.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.8e-181 639.4 363 83.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.0e-181 638.6 363 83.2
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.0e-181 638.6 359 82.2
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.9e-181 638.3 363 82.6
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.1e-180 636.7 359 82.2
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.9e-180 636.0 385 79.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.5e-180 635.6 364 82.7
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.5e-180 635.6 360 83.6
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.3e-180 634.8 359 83.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.3e-180 634.8 360 83.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 4.3e-180 634.8 365 82.5
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.7e-180 634.4 368 82.1
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 5.7e-180 634.4 368 81.8
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 7.4e-180 634.0 363 81.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-179 632.9 368 80.4
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.7e-179 632.9 358 81.8
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.7e-179 632.9 358 81.6
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.7e-179 632.9 365 82.2
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.7e-179 632.9 359 81.3
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.8e-179 632.1 359 81.3
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.8e-179 632.1 360 83.1
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.7e-179 631.7 368 81.0
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 3.7e-179 631.7 365 81.6
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 4.8e-179 631.3 360 82.5
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 6.3e-179 630.9 360 83.1
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 6.3e-179 630.9 364 83.0
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.1e-178 630.2 364 82.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.4e-178 629.0 357 82.4
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.1e-178 628.6 359 81.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.1e-178 628.6 376 79.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.5e-177 626.3 359 80.8
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.5e-177 626.3 363 82.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-177 625.9 376 80.1
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 7.7e-177 624.0 359 80.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 7.7e-177 624.0 380 79.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.0e-176 623.6 360 79.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.9e-176 622.1 359 81.3
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.9e-176 622.1 380 78.9
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.8e-176 621.7 363 80.2
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.5e-176 620.9 360 81.4
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 6.5e-176 620.9 363 79.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 8.5e-176 620.5 357 82.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 8.5e-176 620.5 357 82.6
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-175 620.2 376 79.5
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-175 619.8 368 79.3
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.9e-175 619.4 363 81.5
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.5e-175 619.0 360 80.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 4.2e-175 618.2 362 81.5
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 5.5e-175 617.8 366 80.9
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 7.2e-175 617.5 365 80.5
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.2e-175 617.5 357 81.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 9.4e-175 617.1 359 79.9
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.2e-174 616.7 362 79.8
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.6e-174 616.3 365 79.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.6e-174 616.3 365 79.7
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.7e-174 614.8 376 79.0
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.5e-172 609.8 363 79.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.0e-172 609.4 405 73.6
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.6e-172 609.0 360 77.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.4e-172 608.2 358 80.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 5.7e-172 607.8 358 79.6
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 5.7e-172 607.8 358 79.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.7e-172 607.8 360 77.5
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 7.4e-172 607.4 357 78.7
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.7e-171 606.3 358 79.3
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.2e-171 605.9 358 79.6
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.8e-171 605.5 358 79.1
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.8e-171 605.5 358 79.9
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 4.8e-171 604.7 396 73.5
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 8.2e-171 604.0 358 79.1
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.4e-170 603.2 358 79.1
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.2e-169 600.1 360 78.6
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-169 599.7 341 82.7
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.6e-169 599.0 362 78.5
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.6e-169 599.0 356 77.8
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 5.9e-169 597.8 358 78.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.2e-168 595.9 357 77.9
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 5.0e-168 594.7 362 78.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.5e-168 594.3 361 76.2
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-167 593.6 367 77.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.5e-167 592.4 366 76.2
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.2e-167 592.0 356 79.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.2e-167 591.7 355 78.0
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.7e-166 589.0 360 77.8
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 4.7e-166 588.2 358 77.9
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 8.0e-166 587.4 341 79.5
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.0e-165 587.0 450 65.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.4e-165 586.6 360 76.1
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.0e-165 585.5 362 76.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.6e-164 582.4 360 76.7
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.8e-163 578.9 353 75.1
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.4e-162 576.6 356 74.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 5.3e-162 574.7 362 76.8
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 2.6e-161 572.4 362 77.3
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 7.7e-161 570.9 359 76.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-160 569.7 357 74.2
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.2e-160 569.3 368 74.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.0e-160 568.2 358 72.6
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.9e-159 566.2 353 73.1
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.7e-156 554.7 355 73.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 3.2e-151 538.9 306 81.7
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 9.8e-148 527.3 322 77.6
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.5e-143 512.7 358 70.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.3e-143 512.3 385 68.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.4e-141 506.9 361 64.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 7.8e-137 491.1 365 61.1
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.9e-135 486.5 345 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.2e-134 483.8 362 63.3
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.3e-133 479.6 361 60.9
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-128 463.0 327 70.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 8.0e-126 454.5 301 75.7
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 4.9e-123 445.3 373 57.4
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 5.4e-114 415.2 248 79.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 7.8e-113 411.4 223 86.1
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 4.2e-106 389.0 235 77.9
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.1e-102 376.7 248 73.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.3e-96 356.7 198 83.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.6e-95 351.3 198 82.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 6.2e-94 348.6 454 40.7
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.4e-93 347.4 345 49.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 4.0e-93 345.9 349 50.1
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 7.1e-90 335.1 372 46.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 3.5e-81 306.2 225 67.6
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 9.6e-79 298.1 189 72.5
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-74 284.6 217 69.6
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.9e-72 276.2 258 58.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.4e-69 267.7 178 70.8
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 5.1e-64 249.2 155 73.5
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.1e-63 248.1 179 69.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-59 233.4 156 73.1
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 6.5e-59 232.3 229 54.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-56 224.2 129 80.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.2e-54 215.3 339 39.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.8e-53 214.2 124 79.0
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.8e-51 206.5 121 76.9
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-50 204.9 345 38.8
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.3e-47 193.4 108 80.6
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 9.7e-47 191.8 127 70.9
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.2e-38 164.1 122 62.3
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.0e-36 157.5 131 61.8
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-31 141.7 88 75.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.9e-30 136.3 128 54.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.6e-28 131.3 66 86.4
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.3e-26 123.6 71 81.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 9.5e-18 95.5 87 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 3.6e-17 93.6 87 49.4
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.4e-13 81.6 42 85.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 5.2e-08 63.2 35 71.4
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 6.8e-08 62.8 134 31.3


User provided reference genes

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