Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.9e-90 334.0 169 100.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-87 325.5 167 97.6
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-84 315.1 165 95.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.3e-83 313.2 167 95.2
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.2e-65 253.4 168 76.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.5e-64 247.7 164 76.2
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 5.5e-63 244.6 164 75.0
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 7.2e-63 244.2 168 74.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.6e-62 243.0 161 73.9
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.7e-62 242.3 162 75.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.7e-62 242.3 167 71.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-61 240.0 164 73.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.8e-61 239.6 163 75.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.1e-60 236.9 163 71.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.3e-60 235.3 195 66.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 5.7e-60 234.6 175 70.3
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 5.7e-60 234.6 161 73.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 9.7e-60 233.8 163 71.8
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 9.7e-60 233.8 161 71.4
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.3e-59 233.4 160 74.4
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-59 233.0 164 69.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 4.8e-59 231.5 163 72.4
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.8e-59 231.5 163 71.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 6.3e-59 231.1 167 71.3
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 8.2e-59 230.7 165 68.5
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.1e-58 230.3 160 73.8
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.4e-58 229.2 160 73.1
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 4.1e-58 228.4 160 73.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.1e-58 228.4 162 71.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.1e-58 228.4 163 70.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.3e-58 228.0 167 67.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 9.1e-58 227.3 160 73.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.2e-57 226.9 163 70.6
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.2e-57 226.9 159 71.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.0e-57 226.1 167 67.1
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.0e-56 223.8 164 68.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.3e-56 223.4 163 68.7
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.3e-56 223.4 163 71.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.7e-56 223.0 165 69.1
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.2e-56 222.6 162 71.6
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.2e-56 222.6 160 68.1
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.2e-56 222.6 163 68.7
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.9e-56 222.2 163 68.1
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.9e-56 222.2 171 66.1
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.5e-56 221.1 163 67.5
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.5e-56 220.7 167 67.7
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.1e-55 220.3 159 68.6
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.1e-55 220.3 163 68.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.5e-55 219.9 159 69.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.2e-55 218.4 163 67.5
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 9.4e-55 217.2 159 67.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 4.7e-54 214.9 150 72.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.1e-54 214.5 167 65.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 8.0e-54 214.2 164 61.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.4e-53 213.4 167 63.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.8e-53 213.0 164 61.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.3e-53 212.6 195 60.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.0e-53 212.2 157 66.2
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.0e-53 212.2 163 59.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.0e-53 211.8 168 63.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 8.8e-53 210.7 167 64.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.5e-52 209.9 163 67.5
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.5e-52 209.9 163 64.4
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.8e-51 205.7 187 59.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.1e-50 201.8 167 64.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 7.0e-50 201.1 185 58.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.6e-49 199.9 165 61.8
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.0e-49 199.5 164 63.4
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.5e-49 198.7 222 50.9
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.9e-49 198.0 165 61.2
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.7e-48 196.4 165 61.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.5e-48 194.5 165 60.0
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 2.7e-46 189.1 124 75.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.0e-45 187.2 165 59.4
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.4e-45 186.8 167 55.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 5.2e-45 184.9 167 59.9
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.0e-44 183.0 174 59.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.6e-44 182.6 119 76.5
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.6e-44 182.6 131 71.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 4.4e-44 181.8 160 56.9
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 7.5e-44 181.0 147 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.7e-43 179.9 159 57.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.2e-43 179.5 161 55.3
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.7e-43 178.7 165 55.2
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 6.3e-43 177.9 163 55.2
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.1e-42 177.2 163 55.2
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.1e-42 175.3 161 54.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.4e-42 174.9 161 54.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.0e-41 172.9 126 70.6
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 7.7e-41 171.0 161 52.8
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.3e-40 169.5 120 67.5
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.5e-39 166.8 161 52.2
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.5e-39 166.8 110 75.5
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-39 166.4 141 61.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.5e-39 166.0 184 52.7
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.8e-38 162.5 161 51.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 8.0e-38 161.0 164 51.2
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.3e-37 159.5 163 50.3
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.0e-37 158.7 166 51.8
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.2e-37 158.3 160 50.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 2.0e-36 156.4 165 50.9
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.6e-36 156.0 160 50.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-36 156.0 124 64.5
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 5.7e-36 154.8 165 50.3
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 5.7e-36 154.8 165 50.3
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 7.5e-36 154.5 98 75.5
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.2e-35 152.9 121 70.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.4e-34 149.4 162 48.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.4e-34 149.4 162 48.1
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.4e-34 149.4 124 62.9
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 3.1e-34 149.1 131 62.6
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.4e-34 148.3 125 64.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.6e-33 146.7 162 46.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-32 142.9 124 57.3
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.6e-32 141.0 137 52.6
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.8e-30 136.0 176 40.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 6.1e-30 134.8 160 43.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 8.0e-30 134.4 166 44.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 8.0e-30 134.4 162 44.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.8e-29 133.3 166 44.6
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.8e-29 133.3 166 44.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 5.2e-29 131.7 146 52.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-28 130.6 179 41.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.6e-28 129.4 125 56.8
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 7.5e-28 127.9 161 42.9
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 9.8e-28 127.5 160 42.5
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.9e-27 125.9 118 59.3
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-26 122.9 160 41.9
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 9.2e-26 120.9 110 54.5
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.0e-24 117.5 165 40.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-24 117.1 142 47.9
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.0e-24 115.9 83 75.9
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.4e-21 107.1 120 46.7
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 4.0e-21 105.5 159 37.1
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 8.9e-21 104.4 132 49.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.4e-18 97.1 163 35.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 7.3e-15 84.7 166 32.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 2.1e-14 83.2 68 55.9
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.7e-14 82.0 89 51.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.8e-13 80.1 49 71.4
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.0e-13 79.0 42 81.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.5e-12 77.0 42 78.6
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.6e-12 76.3 42 78.6
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.5e-12 74.7 42 78.6
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.9e-11 72.8 44 72.7
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 2.9e-11 72.8 91 45.1
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.9e-11 72.8 42 73.8
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.2e-09 67.4 78 50.0
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.6e-06 55.8 41 56.1
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 8.1e-06 54.7 51 45.1


User provided reference genes

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