Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.7e-49 198.4 100 100.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.7e-49 198.4 100 100.0
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.4e-37 159.5 99 84.8
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.4e-34 148.7 96 83.3
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.2e-34 147.9 99 79.8
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 7.1e-34 147.1 97 81.4
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.7e-33 145.2 99 79.8
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.1e-31 139.8 101 74.3
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.9e-31 139.0 95 78.9
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-31 139.0 100 75.0
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-31 139.0 100 75.0
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.3e-31 138.3 101 72.3
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.3e-31 138.3 99 73.7
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 4.3e-31 137.9 92 79.3
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 9.6e-31 136.7 92 81.5
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.6e-30 136.0 125 64.0
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 2.1e-30 135.6 97 75.3
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 3.6e-30 134.8 99 73.7
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 3.6e-30 134.8 99 75.8
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 3.6e-30 134.8 95 71.6
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.6e-30 134.8 100 73.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 3.6e-30 134.8 97 72.2
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 8.1e-30 133.7 99 71.7
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.4e-29 132.9 99 73.7
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 3.1e-29 131.7 99 76.8
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 3.1e-29 131.7 99 72.7
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 4.0e-29 131.3 100 72.0
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 5.3e-29 131.0 99 69.7
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 6.9e-29 130.6 99 72.7
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 9.0e-29 130.2 94 75.5
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.2e-28 129.8 99 70.7
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.0e-28 129.0 100 70.0
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 2.0e-28 129.0 99 68.7
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.6e-28 128.6 99 71.7
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 3.4e-28 128.3 100 70.0
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 3.4e-28 128.3 99 68.7
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 5.8e-28 127.5 99 69.7
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.9e-28 126.7 95 71.6
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.9e-28 126.7 95 71.6
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-27 126.3 95 70.5
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.3e-27 126.3 96 67.7
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.7e-27 125.9 99 67.7
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.7e-27 125.9 99 67.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.7e-27 125.9 109 66.1
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.9e-27 125.2 105 64.8
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 4.9e-27 124.4 96 69.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 4.9e-27 124.4 98 67.3
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 8.4e-27 123.6 101 66.3
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.4e-27 123.6 94 70.2
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.4e-27 123.6 94 70.2
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 8.4e-27 123.6 98 67.3
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 8.4e-27 123.6 98 67.3
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.4e-27 123.6 99 66.7
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 8.4e-27 123.6 98 67.3
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.4e-26 122.9 100 68.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-26 122.9 96 69.8
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.4e-26 122.9 98 68.4
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.4e-26 122.9 95 70.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.4e-26 122.1 101 65.3
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.2e-26 121.7 98 68.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.2e-26 121.7 98 67.3
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 5.4e-26 120.9 97 67.0
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 7.1e-26 120.6 99 70.7
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 9.3e-26 120.2 99 66.7
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 9.3e-26 120.2 111 60.4
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.2e-25 119.8 82 80.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.7e-25 118.6 99 66.7
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 3.5e-25 118.2 97 63.9
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.5e-25 118.2 93 68.8
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-25 117.5 98 65.3
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-25 117.1 98 65.3
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-25 117.1 98 65.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 7.8e-25 117.1 95 64.2
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 7.8e-25 117.1 99 65.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-24 116.3 98 65.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-24 116.3 98 64.3
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.3e-24 116.3 97 64.9
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.3e-24 116.3 98 62.2
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.7e-24 115.9 98 69.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 2.3e-24 115.5 97 70.1
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 3.0e-24 115.2 92 66.3
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 3.9e-24 114.8 99 64.6
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 8.7e-24 113.6 100 66.0
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-23 112.8 98 63.3
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-23 112.5 96 63.5
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 3.3e-23 111.7 102 64.7
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 3.3e-23 111.7 151 47.7
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 3.3e-23 111.7 89 67.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.6e-23 110.9 84 69.0
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 6.2e-22 107.5 99 64.6
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 8.1e-22 107.1 92 64.1
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.4e-21 106.3 121 54.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-21 105.9 101 57.4
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-21 104.0 96 61.5
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-20 102.4 92 60.9
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 2.6e-20 102.1 82 65.9
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 7.6e-20 100.5 94 61.7
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.2e-19 99.0 97 58.8
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 3.8e-19 98.2 98 58.2
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 3.8e-19 98.2 90 62.2
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 6.4e-19 97.4 81 64.2
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 6.4e-19 97.4 93 61.3
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 8.4e-19 97.1 95 63.2
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.9e-18 95.9 91 58.2
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 1.9e-18 95.9 100 52.0
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.9e-18 95.9 96 57.3
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 7.1e-18 94.0 62 79.0
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.1e-18 94.0 49 91.8
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 9.3e-18 93.6 95 56.8
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.7e-17 92.0 43 100.0
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 2.7e-17 92.0 95 56.8
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.5e-17 91.7 101 52.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.0e-17 90.9 95 55.8
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-16 89.4 70 71.4
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.8e-16 89.4 97 55.7
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.3e-16 89.0 95 52.6
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.7e-16 87.4 95 52.6
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 8.7e-16 87.0 85 58.8
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.1e-15 86.7 98 52.0
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-15 85.9 93 54.8
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.3e-14 83.2 91 53.8
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 2.1e-14 82.4 98 55.1
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-13 80.1 66 68.2
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.4e-13 79.7 93 44.1
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.2e-12 76.6 72 59.7
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.5e-12 76.3 98 49.0
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.5e-12 76.3 76 59.2
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.6e-12 75.5 94 48.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 3.4e-12 75.1 85 52.9
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 2.2e-11 72.4 86 51.2
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.5e-11 70.9 68 58.8
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.4e-10 69.7 76 52.6
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.9e-10 69.3 96 46.9
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.2e-09 66.6 55 63.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 2.7e-09 65.5 55 63.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 7.9e-09 63.9 87 46.0
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-08 61.6 74 54.1
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.9e-07 59.3 38 78.9


User provided reference genes

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