Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.6e-77 292.7 150 100.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.8e-77 290.4 150 99.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 3.9e-68 261.5 150 84.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.1e-67 260.0 150 84.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.1e-66 255.8 150 84.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 8.3e-63 243.8 150 79.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.9e-62 242.7 150 80.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 9.2e-62 240.4 150 78.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.6e-61 239.6 150 78.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 76.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 78.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 76.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.7e-60 236.1 150 76.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.9e-60 235.0 148 78.4
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 7.3e-59 230.7 150 76.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 7.3e-59 230.7 150 73.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 7.3e-59 230.7 150 73.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-58 229.9 150 72.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 72.7
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.2e-58 227.6 150 72.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 8.1e-58 227.3 150 71.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 8.1e-58 227.3 150 71.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 8.1e-58 227.3 150 71.3
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.1e-57 226.9 148 71.6
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.1e-57 226.9 148 73.6
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.8e-57 226.1 150 72.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.8e-57 226.1 147 71.4
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 4.0e-57 224.9 147 73.5
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 74.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 6.8e-57 224.2 147 70.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.6e-56 222.2 148 72.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 72.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 5.8e-56 221.1 149 72.5
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.8e-56 221.1 150 70.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.8e-56 221.1 150 70.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 68.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 72.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 69.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 4.9e-55 218.0 148 70.9
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 6.4e-55 217.6 151 70.2
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.4e-55 217.6 147 70.1
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 68.0
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 70.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 68.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 69.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 70.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 67.3
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 69.3
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 5.4e-54 214.5 148 67.6
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 5.4e-54 214.5 147 70.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 66.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 66.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 70.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 9.2e-54 213.8 149 67.8
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 70.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 69.4
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 70.7
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 67.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 69.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 147 69.4
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-53 213.0 147 68.0
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 68.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 146 69.2
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 68.7
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.0
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.5e-53 211.8 157 66.2
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 68.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 3.5e-53 211.8 148 70.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 69.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 68.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 67.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 66.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.3e-52 209.9 160 65.0
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-52 209.9 148 66.9
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 67.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.7e-52 209.5 147 68.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.9e-52 208.4 148 64.9
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.5e-51 206.5 222 52.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.9e-51 206.1 161 64.6
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 65.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 4.3e-51 204.9 162 61.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 5.6e-51 204.5 148 67.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.3e-51 204.1 170 64.1
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.1e-50 202.6 149 67.1
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.8e-50 202.2 143 65.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 4.7e-50 201.4 150 66.0
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 4.7e-50 201.4 149 63.8
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 6.2e-50 201.1 181 56.4
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 6.2e-50 201.1 148 66.2
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 8.1e-50 200.7 149 62.4
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 147 67.3
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 145 67.6
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 145 67.6
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-49 199.5 193 56.5
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.8e-49 199.5 152 63.8
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 4.0e-49 198.4 143 67.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.0e-49 198.4 143 67.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.0e-49 198.4 143 67.8
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 61.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 63.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 63.1
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.0e-49 197.2 150 64.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.0e-49 197.2 143 67.1
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 9.0e-49 197.2 140 65.0
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 66.0
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.2e-48 196.8 143 67.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.6e-48 195.7 149 61.7
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 4.4e-48 194.9 148 60.8
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.6e-48 194.1 144 62.5
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 7.6e-48 194.1 149 61.7
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 7.6e-48 194.1 148 68.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 7.6e-48 194.1 161 57.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 9.9e-48 193.7 150 62.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 9.9e-48 193.7 150 62.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 9.9e-48 193.7 149 61.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.3e-47 193.4 135 68.1
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.2e-47 192.6 148 63.5
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 60.4
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.9e-47 191.4 144 61.1
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 59.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 8.4e-47 190.7 140 66.4
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 8.4e-47 190.7 140 62.9
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 59.1
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.9e-46 189.5 144 61.8
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.2e-46 188.7 144 60.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 4.2e-46 188.3 151 60.9
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 7.1e-46 187.6 143 62.2
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 7.1e-46 187.6 143 62.2
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-44 183.7 143 60.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.3e-44 182.6 143 60.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 3.0e-44 182.2 144 58.3
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.0e-44 182.2 143 62.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 4.5e-40 168.3 141 60.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.4e-38 162.5 105 70.5
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.4e-38 162.5 105 70.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 9.3e-38 160.6 151 58.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.0e-36 155.6 149 52.3
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-34 149.1 151 52.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 4.8e-34 148.3 135 55.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 4.8e-34 148.3 135 55.6
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.4e-33 146.7 133 57.9
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.4e-33 146.0 105 65.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.9e-33 144.4 149 51.0
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.4e-32 142.1 107 59.8
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 89 74.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.7e-31 139.8 99 66.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 6.4e-31 137.9 145 47.6
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.5e-30 134.8 89 73.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.2e-29 133.7 103 63.1
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 6.0e-29 131.3 89 70.8
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.1e-26 122.9 144 42.4
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-25 120.2 149 46.3
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-23 113.6 88 58.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.4e-22 110.2 82 57.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.5e-22 109.4 86 55.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.2e-22 109.0 140 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 9.3e-22 107.5 138 35.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.5e-21 105.5 103 49.5
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.3e-20 103.6 138 34.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.7e-18 95.5 149 32.2
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 4.8e-18 95.1 102 49.0
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.1e-17 92.4 144 36.8
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-16 90.1 72 61.1
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 5.0e-15 85.1 107 32.7
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-12 76.6 87 44.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.3e-12 76.3 139 30.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.9e-11 73.2 81 51.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 4.3e-11 72.0 129 26.4
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.7e-10 70.1 82 48.8
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.0e-08 63.2 46 63.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-08 62.8 35 71.4
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.5e-07 58.2 83 41.0
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 8.5e-07 57.8 134 25.4


User provided reference genes

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