Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 9.5e-259 896.7 600 100.0
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 9.7e-179 630.9 589 73.3
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 2.6e-168 596.3 596 72.5
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 6.3e-146 521.9 600 64.7
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 2.0e-139 500.4 630 60.3
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 6.4e-138 495.4 597 66.2
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 2.0e-136 490.3 590 57.5
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 3.9e-135 486.1 584 62.2
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.9e-134 483.8 591 65.5
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.1e-132 478.0 589 60.1
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 3.1e-132 476.5 577 61.5
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 4.0e-132 476.1 586 61.8
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 5.8e-131 472.2 590 62.0
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 1.1e-129 468.0 590 63.6
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.9e-129 467.2 602 54.8
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 5.4e-129 465.7 587 59.8
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 1.3e-127 461.1 609 48.6
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 1.3e-127 461.1 590 59.0
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 1.7e-127 460.7 587 54.3
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 2.3e-127 460.3 587 55.0
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 3.0e-127 459.9 483 71.4
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 4.3e-126 456.1 626 56.5
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 9.5e-126 454.9 587 58.4
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 6.2e-125 452.2 618 60.8
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.1e-124 449.9 602 46.8
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 4.0e-124 449.5 594 62.8
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 5.2e-124 449.1 606 41.7
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 6.8e-124 448.7 591 59.4
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 4.4e-123 446.0 576 59.4
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 9.9e-123 444.9 592 53.9
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 2.9e-122 443.4 583 61.7
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 8.3e-122 441.8 613 52.0
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.4e-121 441.0 617 47.2
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 1.9e-121 440.7 582 57.2
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 2.4e-121 440.3 579 60.8
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 3.2e-121 439.9 594 62.1
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 2.1e-120 437.2 584 55.7
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 1.3e-119 434.5 603 61.9
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.3e-119 434.5 592 57.8
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.3e-119 434.5 592 57.4
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 3.0e-119 433.3 586 59.4
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 8.6e-119 431.8 594 62.1
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 1.9e-118 430.6 578 58.8
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 2.5e-118 430.3 611 49.1
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 6.2e-117 425.6 556 58.3
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 1.1e-116 424.9 610 46.7
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 3.1e-116 423.3 530 61.9
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 6.8e-116 422.2 607 46.6
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 4.4e-115 419.5 590 59.0
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 5.8e-115 419.1 581 46.3
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 7.6e-115 418.7 608 54.1
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 1.7e-114 417.5 607 57.2
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 8.4e-114 415.2 603 56.6
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 4.6e-112 409.5 578 56.2
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 3.9e-111 406.4 561 58.6
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 4.0e-108 396.4 584 58.6
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 9.0e-108 395.2 509 63.9
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 1.7e-106 391.0 581 49.2
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 2.4e-105 387.1 588 55.3
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 5.4e-105 386.0 365 66.6
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 7.1e-105 385.6 587 57.6
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 4.6e-104 382.9 587 58.3
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 6.0e-104 382.5 599 53.8
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 7.8e-104 382.1 594 52.2
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 1.3e-103 381.3 581 59.7
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 5.1e-103 379.4 593 58.3
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 1.5e-102 377.9 587 59.3
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 9.0e-100 368.6 523 52.8
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 2.6e-99 367.1 613 48.9
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 3.4e-99 366.7 582 58.8
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 3.8e-98 363.2 592 55.4
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 8.4e-98 362.1 516 56.8
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 4.2e-97 359.8 613 51.9
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.0e-95 355.1 517 60.0
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 2.3e-95 354.0 587 54.7
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 8.7e-95 352.1 599 49.6
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 8.7e-95 352.1 599 49.6
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 2.5e-94 350.5 594 50.5
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 2.5e-94 350.5 594 50.5
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 3.1e-92 343.6 594 50.2
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 5.8e-91 339.3 550 53.6
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 1.9e-89 334.3 589 52.8
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.8e-84 317.8 394 57.4
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 4.2e-81 306.6 584 47.9
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 2.5e-78 297.4 593 50.9
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 4.3e-78 296.6 592 53.2
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 1.7e-74 284.6 591 47.0
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 6.5e-74 282.7 606 49.7
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 1.6e-72 278.1 587 48.9
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 1.1e-70 271.9 361 51.5
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 3.3e-70 270.4 550 55.6
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 3.3e-70 270.4 589 48.9
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 5.7e-70 269.6 500 52.0
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 9.7e-70 268.9 366 62.8
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 9.7e-70 268.9 595 48.2
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 4.8e-69 266.5 586 47.1
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 9.1e-68 262.3 574 44.8
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 2.7e-64 250.8 597 35.0
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 2.7e-64 250.8 597 35.0
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 3.3e-62 243.8 535 47.7
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 9.7e-62 242.3 604 48.2
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 2.2e-61 241.1 609 28.4
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 1.8e-55 221.5 521 45.5
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.7e-48 197.6 319 38.6
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 7.5e-38 162.9 218 52.3
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 2.1e-32 144.8 225 40.0
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.9e-29 134.4 152 54.6
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.5e-27 127.5 215 55.3
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 2.5e-25 121.3 158 43.7
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 3.5e-11 74.3 498 38.6
Actinidia27580 Actinidia chinensis HOM05D006572 ORTHO05D008181 6.2e-08 63.5 98 49.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 8.1e-08 63.2 48 62.5
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 2.3e-07 61.6 48 60.4
Medtr0050s0150 Medicago truncatula HOM05D006572 ORTHO05D008181 1.2e-06 59.3 130 36.2
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 1.5e-06 58.9 51 58.8


User provided reference genes

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