Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.3e-139 498.8 240 100.0
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 3.2e-109 398.7 226 84.5
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.8e-105 385.6 231 81.8
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 7.7e-103 377.5 250 74.0
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 1.8e-99 366.3 232 76.7
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.7e-94 349.7 231 71.9
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 2.3e-94 349.4 238 68.5
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 2.9e-94 349.0 231 70.1
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 7.3e-93 344.4 238 70.6
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 9.5e-93 344.0 231 70.1
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 2.0e-90 336.3 229 68.6
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 2.0e-90 336.3 237 66.2
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 2.6e-90 335.9 231 67.5
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 2.6e-90 335.9 230 70.0
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 7.5e-90 334.3 238 68.1
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 9.8e-90 334.0 231 67.5
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 1.3e-89 333.6 229 67.7
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 8.3e-89 330.9 238 66.8
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 1.1e-88 330.5 231 66.7
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.4e-88 329.3 230 65.2
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.4e-88 329.3 228 69.3
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.2e-88 328.9 230 66.1
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 3.2e-88 328.9 238 66.8
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.2e-87 327.0 230 65.2
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 2.0e-87 326.2 237 64.1
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 4.6e-87 325.1 235 64.3
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 5.9e-87 324.7 237 63.3
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 7.8e-87 324.3 247 64.4
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.3e-86 323.6 232 66.4
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 2.3e-86 322.8 229 66.4
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.3e-86 322.8 230 66.1
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 5.0e-86 321.6 231 64.9
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 6.6e-86 321.2 226 68.6
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 8.6e-86 320.9 231 64.1
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.9e-85 319.7 229 67.2
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 3.3e-85 318.9 231 64.9
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 9.5e-85 317.4 232 67.2
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 1.2e-84 317.0 229 64.6
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 1.6e-84 316.6 233 64.4
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 6.2e-84 314.7 231 63.2
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 1.0e-83 313.9 238 62.6
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 4.0e-83 312.0 231 64.5
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 6.8e-83 311.2 231 62.8
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 6.8e-83 311.2 231 62.8
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 8.9e-83 310.8 231 62.8
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 5.8e-82 308.1 231 62.3
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 2.9e-81 305.8 232 65.5
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 3.7e-81 305.4 231 64.9
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 4.9e-81 305.1 228 65.8
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.4e-80 303.5 231 61.0
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 1.9e-80 303.1 231 63.6
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.2e-79 300.4 224 63.4
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.5e-79 298.9 231 62.3
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 4.6e-79 298.5 231 62.8
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 4.6e-79 298.5 224 62.9
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.3e-78 297.0 231 61.9
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 1.3e-78 297.0 231 62.8
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.3e-78 297.0 237 60.3
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.7e-78 296.6 228 59.6
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 2.3e-78 296.2 231 61.0
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 1.1e-77 293.9 230 63.0
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 1.9e-77 293.1 232 62.5
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 1.9e-77 293.1 232 62.5
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.9e-77 293.1 231 60.6
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 4.3e-77 292.0 232 62.5
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 7.3e-77 291.2 228 63.2
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 9.5e-77 290.8 231 61.9
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-76 290.0 243 58.4
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.1e-76 289.7 231 60.2
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 3.6e-76 288.9 229 61.6
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 3.6e-76 288.9 225 62.7
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 4.7e-76 288.5 231 60.2
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 8.1e-76 287.7 225 63.1
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 6.8e-75 284.6 238 60.9
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 1.2e-74 283.9 232 61.6
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 2.6e-74 282.7 225 61.8
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 3.4e-74 282.3 232 61.2
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 5.8e-74 281.6 201 66.7
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-72 276.9 231 60.2
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 9.2e-72 274.2 202 65.3
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.6e-71 273.5 240 57.1
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 6.0e-71 271.6 237 56.1
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 7.8e-71 271.2 187 71.1
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-69 267.3 211 61.1
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.1e-67 260.8 238 56.7
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 5.2e-67 258.5 232 54.7
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.2e-65 253.1 193 64.8
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 8.4e-65 251.1 192 68.2
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.9e-64 250.0 253 53.4
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 2.1e-63 246.5 188 64.9
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 3.6e-60 235.7 224 53.1
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 8.1e-60 234.6 185 62.7
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.4e-59 233.8 188 60.1
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.7e-57 226.9 177 61.6
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 8.4e-57 224.6 188 60.1
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 2.4e-56 223.0 241 46.9
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.0e-54 217.6 205 57.6
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 3.3e-53 212.6 167 64.1
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 1.4e-51 207.2 193 58.0
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 6.9e-51 204.9 161 63.4
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 6.4e-49 198.4 217 47.5
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 1.2e-47 194.1 228 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 4.3e-45 185.7 174 51.7
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 5.6e-45 185.3 252 41.3
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.0e-43 179.1 155 58.1
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 4.0e-43 179.1 151 62.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 2.2e-41 173.3 238 42.4
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.8e-41 172.6 231 42.0
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 4.6e-39 165.6 230 40.4
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.3e-38 164.1 162 56.2
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.9e-37 160.2 105 72.4
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.3e-33 147.5 148 48.6
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 2.8e-28 129.8 168 45.2
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 6.3e-28 128.6 87 66.7
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 9.0e-27 124.8 75 69.3
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 4.5e-26 122.5 115 53.9
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 2.2e-25 120.2 145 45.5
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 9.3e-24 114.8 144 42.4
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 5.1e-22 109.0 118 50.0
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 8.7e-22 108.2 74 63.5
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.5e-21 106.7 74 62.2
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.3e-20 104.4 73 68.5
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 4.2e-16 89.4 104 49.0
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.7e-15 85.9 90 46.7
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 7.9e-15 85.1 86 52.3
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 3.9e-14 82.8 142 35.9
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 5.1e-14 82.4 70 48.6
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 2.2e-12 77.0 78 44.9
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.7e-12 76.3 72 51.4
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 6.9e-11 72.0 39 84.6


User provided reference genes

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