Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.0e-95 353.6 209 100.0
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 9.7e-94 347.1 209 99.5
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 1.2e-64 250.4 208 71.2
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.2e-62 243.8 207 67.6
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.2e-62 243.8 204 70.1
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.4e-60 236.9 208 65.4
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 3.2e-60 235.7 212 66.5
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 4.1e-60 235.3 205 68.8
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 7.0e-60 234.6 202 67.8
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 9.2e-60 234.2 209 65.1
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.2e-59 233.8 175 72.6
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 2.1e-59 233.0 208 66.8
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 1.0e-58 230.7 207 70.0
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.7e-58 229.9 213 65.7
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.7e-58 229.9 213 65.7
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 3.9e-58 228.8 226 67.3
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 1.1e-57 227.3 194 68.6
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 7.3e-57 224.6 174 68.4
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 2.1e-56 223.0 207 68.1
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 3.6e-56 222.2 213 60.1
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 3.6e-56 222.2 209 67.0
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 3.6e-56 222.2 219 64.8
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 1.8e-55 219.9 227 58.6
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 1.8e-55 219.9 224 64.3
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 1.8e-55 219.9 187 67.4
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.8e-55 219.9 232 65.1
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 3.1e-55 219.2 212 62.7
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.0e-55 218.8 217 65.0
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 3.4e-54 215.7 183 65.6
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 3.4e-54 215.7 207 61.8
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 9.9e-54 214.2 176 66.5
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 9.9e-54 214.2 224 63.8
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 1.3e-53 213.8 216 60.2
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 2.2e-53 213.0 204 59.8
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 2.9e-53 212.6 212 56.1
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.9e-53 212.6 185 67.6
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.7e-53 212.2 182 64.3
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 1.1e-52 210.7 207 62.3
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 1.9e-52 209.9 213 58.2
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.9e-52 209.9 208 58.7
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.9e-52 209.9 165 64.2
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 5.4e-52 208.4 211 68.2
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 5.4e-52 208.4 217 59.9
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 9.2e-52 207.6 209 61.2
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 1.2e-51 207.2 195 61.0
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 3.5e-51 205.7 209 65.6
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 4.6e-51 205.3 202 62.9
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 4.6e-51 205.3 204 59.3
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 4.6e-51 205.3 176 66.5
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 7.8e-51 204.5 214 65.0
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.0e-50 204.1 207 58.0
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 3.0e-50 202.6 211 62.6
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 5.1e-50 201.8 164 68.9
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 5.1e-50 201.8 184 60.9
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 5.1e-50 201.8 203 57.1
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 8.6e-50 201.1 202 55.4
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 1.5e-49 200.3 167 64.7
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.5e-49 200.3 163 65.6
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 1.5e-49 200.3 174 69.5
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 4.3e-49 198.7 226 58.8
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.6e-49 198.4 207 56.5
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 7.3e-49 198.0 208 53.4
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 9.5e-49 197.6 209 67.0
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 1.6e-48 196.8 205 54.6
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 3.6e-48 195.7 176 63.1
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 3.6e-48 195.7 118 79.7
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 6.2e-48 194.9 218 64.2
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 8.1e-48 194.5 176 70.5
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 3.1e-47 192.6 218 58.7
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 4.0e-47 192.2 176 70.5
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 5.2e-47 191.8 182 68.7
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 6.8e-47 191.4 197 61.4
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 8.9e-47 191.0 215 63.7
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 8.9e-47 191.0 214 60.7
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 8.9e-47 191.0 176 71.0
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 3.4e-46 189.1 213 65.7
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 4.4e-46 188.7 208 56.2
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 4.4e-46 188.7 219 59.8
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 7.6e-46 188.0 112 80.4
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 9.9e-46 187.6 216 61.6
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 9.9e-46 187.6 178 59.0
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 1.7e-45 186.8 206 53.9
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 2.9e-45 186.0 175 61.7
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 1.1e-44 184.1 169 62.1
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 9.2e-44 181.0 208 52.9
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.2e-43 180.6 116 75.9
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 1.6e-43 180.3 160 73.8
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 4.6e-43 178.7 169 59.8
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 4.6e-43 178.7 169 59.8
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 7.8e-43 177.9 110 79.1
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 7.8e-43 177.9 207 55.1
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 1.7e-42 176.8 211 52.1
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.7e-42 176.8 169 59.2
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 1.7e-42 176.8 211 52.1
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 8.7e-42 174.5 234 53.0
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 1.1e-41 174.1 114 74.6
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 1.1e-41 174.1 164 61.0
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.5e-41 172.9 196 54.6
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 3.3e-41 172.6 158 60.1
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 4.3e-41 172.2 209 49.3
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.6e-40 169.1 220 57.7
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 4.8e-40 168.7 107 71.0
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 1.8e-39 166.8 105 79.0
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 9.0e-39 164.5 230 46.1
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.1e-33 147.5 119 66.4
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 1.3e-32 144.1 119 63.9
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 3.6e-32 142.5 87 79.3
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 6.4e-29 131.7 115 53.0
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.9e-25 120.2 110 53.6
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 3.3e-25 119.4 108 53.7
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 8.1e-24 114.8 101 51.5
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 5.3e-23 112.1 152 49.3
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.6e-19 100.5 169 53.8
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.3e-17 92.4 143 50.3
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 2.0e-14 83.6 72 54.2
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 6.5e-13 78.6 147 49.7
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 3.1e-07 59.7 160 47.5
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.1e-07 59.3 39 71.8
Hund02819 Selenicereus undatus HOM05D000190 ORTHO05D000113 1.0e-05 54.7 105 55.2


User provided reference genes

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