Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.3e-167 592.4 360 100.0
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.4e-110 402.1 360 75.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-107 394.0 355 76.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.0e-107 393.3 359 74.7
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.9e-107 391.7 355 75.5
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 8.6e-106 387.9 355 73.8
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.1e-105 387.5 365 73.2
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 5.6e-105 385.2 364 72.5
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.2e-103 378.6 362 72.7
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 5.8e-102 375.2 359 73.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.4e-101 371.7 359 71.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.3e-98 364.0 359 70.2
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.3e-98 363.2 358 70.7
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.3e-98 363.2 358 70.7
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 6.6e-98 361.7 295 83.1
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 8.6e-98 361.3 359 71.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 8.6e-98 361.3 359 72.1
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.1e-97 360.9 361 70.1
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.5e-97 360.5 359 71.6
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.9e-97 360.1 359 71.3
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.3e-97 359.4 357 69.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.6e-97 358.6 359 69.4
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.8e-96 356.3 361 71.2
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 3.6e-96 355.9 359 68.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.1e-95 354.4 358 70.1
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 2.3e-95 353.2 355 70.7
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 7.5e-94 348.2 361 69.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.9e-93 346.3 357 69.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 6.4e-93 345.1 371 68.5
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 6.4e-93 345.1 366 65.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-92 344.0 363 68.9
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.9e-92 343.6 355 67.9
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.2e-92 342.8 358 69.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.1e-92 342.4 359 70.2
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 7.1e-92 341.7 383 64.0
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.2e-92 341.3 299 78.6
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 9.2e-92 341.3 362 68.5
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-91 340.5 359 69.9
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.7e-91 339.7 358 67.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.6e-91 339.0 364 67.0
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 6.0e-91 338.6 242 71.9
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.0e-90 336.3 359 66.9
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 5.1e-90 335.5 306 75.8
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 5.1e-90 335.5 355 66.5
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 6.6e-90 335.1 365 66.8
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-89 334.3 293 77.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.9e-89 333.6 359 66.3
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.9e-89 333.6 311 74.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.9e-89 333.6 362 67.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 3.3e-89 332.8 355 61.4
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.3e-89 332.8 361 68.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 7.3e-89 331.6 314 75.2
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.7e-88 328.9 395 49.9
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 6.2e-88 328.6 353 66.3
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 6.8e-87 325.1 323 71.5
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 6.8e-87 325.1 364 66.5
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 8.9e-87 324.7 359 65.5
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.2e-86 324.3 358 65.1
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.2e-86 324.3 359 65.2
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.5e-86 323.9 357 64.4
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.5e-86 323.9 364 65.1
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 4.4e-86 322.4 353 64.3
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 5.8e-86 322.0 294 73.8
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.3e-85 320.9 292 76.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.2e-85 320.1 290 76.2
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.9e-85 318.9 299 72.6
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.4e-84 317.4 361 65.7
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.9e-84 317.0 362 65.2
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.1e-84 315.8 355 65.6
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 5.4e-84 315.5 360 64.7
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.1e-84 315.1 364 64.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.2e-83 314.3 360 63.6
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.6e-83 313.9 285 76.1
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.5e-83 312.8 285 76.1
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.5e-83 312.8 355 64.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 6.0e-83 312.0 308 68.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.3e-82 310.8 339 66.1
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 3.9e-82 309.3 357 61.9
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 8.6e-82 308.1 312 67.0
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.6e-80 302.8 346 65.6
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 6.2e-80 302.0 365 61.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 6.2e-80 302.0 356 61.8
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 9.9e-78 294.7 356 56.2
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.9e-77 293.1 305 70.2
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.2e-76 289.7 250 62.8
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 4.6e-75 285.8 309 68.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 7.8e-75 285.0 354 59.9
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.0e-74 284.6 359 61.0
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.3e-74 284.3 307 70.7
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.9e-73 280.4 294 62.2
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 5.6e-73 278.9 191 73.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.8e-72 276.6 358 61.7
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.6e-72 276.2 239 62.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.2e-72 275.4 354 60.5
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 8.1e-72 275.0 185 72.4
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.2e-70 271.2 353 58.4
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.5e-70 270.8 357 59.4
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 9.9e-70 268.1 312 60.6
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.9e-68 263.8 242 79.8
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 5.4e-68 262.3 296 65.2
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.0e-66 258.1 368 57.1
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 6.6e-66 255.4 357 56.9
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.6e-65 252.3 435 50.3
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.6e-65 252.3 241 58.1
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.3e-65 251.9 357 56.3
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.8e-64 250.0 316 47.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.3e-63 245.7 357 54.6
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.6e-62 243.4 292 64.7
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 5.8e-62 242.3 165 70.9
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.6e-62 241.9 384 38.8
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-56 223.8 357 53.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.3e-53 214.5 194 87.6
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.1e-52 211.5 297 59.9
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 9.6e-49 198.4 160 64.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.5e-46 191.0 241 68.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.4e-46 189.9 194 80.9
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 5.9e-46 189.1 262 61.5
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.7e-45 187.6 196 52.6
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.1e-43 180.6 214 43.9
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.6e-43 179.5 183 53.6
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 2.6e-38 163.7 286 53.1
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 5.5e-36 156.0 278 52.9
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.5e-33 147.1 129 52.7
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-30 137.9 194 41.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.0e-30 137.5 160 81.9
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.5e-29 132.5 178 43.3
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.5e-29 132.5 186 41.9
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-28 131.3 142 91.5
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 5.9e-22 109.4 84 59.5
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.2e-21 107.5 128 89.1
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 2.5e-20 104.0 114 46.5
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.4e-20 102.1 89 60.7
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.4e-18 98.2 134 67.2
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 2.6e-17 94.0 62 71.0
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.5e-17 92.4 135 83.0
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 9.7e-17 92.0 84 54.8
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.2e-10 69.7 127 78.7
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.0e-09 67.8 56 60.7
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 2.6e-09 67.4 48 79.2
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 1.1e-07 62.0 58 51.7
Dinv15974 Davidia involucrata HOM05D046031 ORTHO05D006215 1.6e-06 58.2 37 83.8
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 3.5e-06 57.0 41 58.5
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 4.5e-06 56.6 56 53.6
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 5.9e-06 56.2 37 70.3


User provided reference genes

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