Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002787 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.1e-26 122.5 60 100.0
CSS0039357 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.1e-26 122.5 60 100.0
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 3.0e-19 97.8 48 91.7
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 3.9e-19 97.4 48 89.6
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 6.6e-19 96.7 47 93.6
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 1.9e-18 95.1 47 91.5
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 4.3e-18 94.0 47 85.1
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 5.6e-18 93.6 47 89.4
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 5.6e-18 93.6 47 87.2
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 9.5e-18 92.8 47 85.1
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 1.2e-17 92.4 46 89.1
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 1.2e-17 92.4 46 89.1
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 1.2e-17 92.4 46 89.1
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 2.1e-17 91.7 43 93.0
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 2.8e-17 91.3 49 87.8
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 3.6e-17 90.9 48 87.5
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 3.6e-17 90.9 45 88.9
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 6.2e-17 90.1 48 87.5
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 8.1e-17 89.7 48 83.3
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 1.1e-16 89.4 47 83.0
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 1.1e-16 89.4 46 84.8
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 1.4e-16 89.0 48 81.2
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 1.8e-16 88.6 48 83.3
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.8e-16 88.6 48 81.2
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.8e-16 88.6 48 81.2
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 2.3e-16 88.2 48 83.3
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 2.3e-16 88.2 48 83.3
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 2.3e-16 88.2 48 83.3
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 2.3e-16 88.2 45 86.7
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 2.3e-16 88.2 48 85.4
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 3.1e-16 87.8 47 83.0
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 3.1e-16 87.8 45 84.4
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 4.0e-16 87.4 47 80.9
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 5.2e-16 87.0 45 86.7
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 5.2e-16 87.0 46 84.8
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 5.2e-16 87.0 47 76.6
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 6.8e-16 86.7 45 86.7
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 8.9e-16 86.3 47 78.7
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 8.9e-16 86.3 47 78.7
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.2e-15 85.9 42 85.7
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 1.2e-15 85.9 45 86.7
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 1.2e-15 85.9 45 86.7
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 1.2e-15 85.9 47 80.9
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 1.5e-15 85.5 45 84.4
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 1.5e-15 85.5 46 82.6
CDE12G0157 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 2.0e-15 85.1 48 83.3
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 2.0e-15 85.1 45 82.2
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 2.0e-15 85.1 41 87.8
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 2.0e-15 85.1 43 86.0
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 2.0e-15 85.1 48 81.2
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 2.6e-15 84.7 47 78.7
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 2.6e-15 84.7 48 79.2
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 3.4e-15 84.3 48 83.3
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 3.4e-15 84.3 48 83.3
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.4e-15 84.0 47 76.6
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 7.5e-15 83.2 48 79.2
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 7.5e-15 83.2 47 76.6
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 7.5e-15 83.2 47 76.6
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 7.5e-15 83.2 45 80.0
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 9.8e-15 82.8 47 76.6
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 1.3e-14 82.4 45 80.0
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 1.7e-14 82.0 42 88.1
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 1.7e-14 82.0 47 80.9
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 2.2e-14 81.6 48 79.2
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 2.2e-14 81.6 38 94.7
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 2.2e-14 81.6 45 77.8
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 3.7e-14 80.9 41 87.8
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 3.7e-14 80.9 47 76.6
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 3.7e-14 80.9 47 76.6
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 3.7e-14 80.9 42 83.3
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 3.7e-14 80.9 44 77.3
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 3.7e-14 80.9 45 77.8
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 4.9e-14 80.5 39 89.7
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 6.4e-14 80.1 44 81.8
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 1.1e-13 79.3 44 81.8
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 1.4e-13 79.0 47 74.5
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 1.4e-13 79.0 45 80.0
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 1.9e-13 78.6 50 72.0
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 1.9e-13 78.6 52 73.1
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 2.4e-13 78.2 44 79.5
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 2.4e-13 78.2 44 79.5
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 2.4e-13 78.2 44 79.5
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 2.4e-13 78.2 44 79.5
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 2.4e-13 78.2 44 79.5
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 2.4e-13 78.2 47 74.5
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 2.4e-13 78.2 45 75.6
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 3.2e-13 77.8 46 76.1
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 4.1e-13 77.4 41 82.9
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 4.1e-13 77.4 47 72.3
BcaB08g34772 Brassica carinata HOM05D001035 ORTHO05D006315 5.4e-13 77.0 44 77.3
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 5.4e-13 77.0 46 78.3
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 7.1e-13 76.6 47 72.3
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 9.2e-13 76.3 48 79.2
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 9.2e-13 76.3 42 71.4
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 9.2e-13 76.3 47 72.3
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.6e-12 75.5 46 73.9
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 1.6e-12 75.5 47 70.2
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 2.1e-12 75.1 43 74.4
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 2.1e-12 75.1 47 70.2
HPP92_015036 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.7e-12 74.7 38 84.2
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.7e-12 74.7 38 84.2
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.7e-12 74.7 38 84.2
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 3.5e-12 74.3 42 73.8
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 3.9e-11 70.9 38 78.9
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 5.1e-11 70.5 38 76.3
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 5.1e-11 70.5 38 76.3
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 6.6e-11 70.1 41 63.4
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 8.6e-11 69.7 40 70.0
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 1.9e-10 68.6 45 66.7
HanXRQChr17g0553071 Helianthus annuus HOM05D005354 ORTHO05D006315 4.3e-10 67.4 38 73.7
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 3.6e-09 64.3 45 64.4
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 6.8e-08 60.1 38 71.1
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 6.8e-08 60.1 38 71.1


User provided reference genes

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