Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 5.4e-111 404.4 192 100.0
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.9e-92 342.8 196 85.2
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 3.6e-91 338.6 196 84.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.9e-88 328.9 198 81.3
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.9e-88 328.9 196 81.6
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.8e-88 328.6 196 82.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 7.1e-87 324.3 183 85.8
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.6e-86 323.2 198 81.3
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.1e-86 322.8 197 80.2
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.5e-86 322.0 199 79.9
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.0e-85 320.5 196 78.1
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.3e-85 320.1 192 81.2
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.8e-85 319.7 188 81.9
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.8e-85 319.7 198 81.3
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.0e-85 318.9 198 79.3
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.9e-85 318.5 198 79.3
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.1e-85 318.2 194 80.4
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 6.7e-85 317.8 198 78.8
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.1e-84 317.0 196 77.6
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.1e-84 317.0 198 79.3
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-84 317.0 198 78.8
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.5e-84 316.6 200 78.0
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 4.3e-84 315.1 253 65.2
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 9.6e-84 313.9 196 80.1
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.8e-83 312.4 196 78.6
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 3.7e-83 312.0 196 77.0
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 3.7e-83 312.0 197 78.7
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 8.1e-83 310.8 196 77.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-82 310.5 207 74.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-82 309.3 196 76.0
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.4e-82 309.3 198 77.8
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 3.1e-82 308.9 197 76.1
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 5.3e-82 308.1 189 79.4
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.9e-82 307.8 196 76.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 6.9e-82 307.8 196 76.5
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.0e-81 306.2 198 77.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 2.6e-81 305.8 196 76.0
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 2.6e-81 305.8 196 76.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 3.4e-81 305.4 198 75.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 7.6e-81 304.3 197 76.6
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.7e-80 303.1 198 74.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.9e-80 301.6 197 76.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.9e-80 301.6 199 75.9
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.1e-79 300.4 198 73.7
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-79 300.4 198 73.7
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-79 300.4 198 74.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-79 300.1 198 73.7
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.2e-79 298.9 197 76.6
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.1e-79 297.7 198 73.7
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.3e-79 297.4 198 72.7
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.6e-78 296.6 186 80.1
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-78 296.6 198 73.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 4.6e-78 295.0 180 80.0
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 6.0e-78 294.7 196 72.4
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.0e-78 294.7 198 73.7
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.0e-77 293.9 198 73.2
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.8e-77 293.1 199 72.9
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.3e-77 292.7 198 72.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.9e-77 292.0 198 73.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 2.5e-76 289.3 185 75.7
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.3e-76 288.5 199 72.4
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.3e-76 288.5 199 72.4
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.7e-76 288.1 196 70.4
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 7.4e-76 287.7 195 73.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 9.6e-76 287.3 192 73.4
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.3e-75 287.0 200 71.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 3.7e-75 285.4 198 71.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.1e-74 283.9 196 71.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.4e-74 282.7 192 73.4
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 6.9e-74 281.2 192 72.4
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 9.0e-74 280.8 198 69.7
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.5e-73 280.0 194 73.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.6e-73 279.3 192 71.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.4e-73 278.9 198 70.2
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 7.6e-73 277.7 199 70.4
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 7.6e-73 277.7 198 68.7
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 3.8e-72 275.4 193 71.0
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 6.5e-72 274.6 197 69.0
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.5e-72 274.2 197 69.5
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.1e-71 273.9 198 71.2
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.9e-71 273.1 197 68.0
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 2.5e-71 272.7 204 67.2
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.5e-71 272.7 194 70.1
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.2e-71 271.9 194 72.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.2e-71 271.9 204 67.2
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 4.2e-71 271.9 217 65.0
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.5e-71 271.6 195 67.7
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 7.2e-71 271.2 198 67.7
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.2e-70 270.4 199 67.8
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.2e-70 270.4 199 67.8
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.6e-70 268.9 198 70.2
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.3e-69 266.9 169 79.3
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 3.0e-69 265.8 193 69.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.9e-69 265.4 198 66.7
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 5.1e-69 265.0 189 69.8
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.3e-68 261.9 179 71.5
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 4.3e-68 261.9 198 66.7
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.3e-67 260.4 194 66.5
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 2.8e-67 259.2 197 65.0
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 6.3e-67 258.1 197 66.5
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 2.4e-66 256.1 198 66.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.9e-66 254.6 191 65.4
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.5e-65 253.4 198 65.2
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.0e-65 253.1 194 66.0
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.9e-65 251.5 198 65.7
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 2.2e-64 249.6 192 64.1
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.4e-63 246.9 193 63.2
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 7.2e-63 244.6 200 63.5
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.4e-61 240.4 203 62.6
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.8e-61 240.0 201 62.2
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 3.0e-61 239.2 196 63.3
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.1e-60 237.3 203 61.6
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.0e-60 236.5 206 63.1
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 4.4e-60 235.3 203 62.1
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.3e-59 233.8 201 62.2
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.8e-59 232.6 203 61.6
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.8e-59 232.6 194 61.3
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.4e-58 230.3 204 60.8
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.4e-58 230.3 204 60.8
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.9e-58 228.0 197 60.9
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.0e-57 226.5 190 62.6
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 9.4e-55 217.6 194 58.2
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.1e-52 210.7 188 59.6
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 4.1e-50 202.2 194 57.7
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.8e-48 195.7 192 55.7
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 6.5e-48 194.9 197 53.8
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 8.0e-46 188.0 203 54.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.1e-42 177.6 195 54.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.4e-42 176.4 200 53.5
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 7.0e-42 174.9 193 52.3
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 3.2e-39 166.0 201 50.7
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 5.5e-39 165.2 148 56.1
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.6e-33 147.1 202 46.5
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.7e-27 127.1 102 62.7
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.0e-21 105.9 207 33.3
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.9e-17 92.0 204 32.4
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 3.9e-16 89.4 198 33.8
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 5.0e-16 89.0 210 33.8
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 1.6e-14 84.0 50 74.0
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.5e-12 77.4 207 30.0
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.8e-12 75.5 106 44.3
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.5e-12 75.1 183 33.3
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.7e-11 72.8 110 36.4
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.4e-10 70.1 176 33.0
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 7.0e-10 68.6 185 35.7
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.0e-10 68.6 169 32.5
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.2e-09 67.8 48 56.2
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.6e-09 67.4 126 39.7
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 3.5e-09 66.2 151 35.1
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 6.0e-09 65.5 53 52.8
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.0e-08 64.7 51 52.9
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.0e-08 64.7 34 67.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-08 64.7 177 33.3
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.0e-08 64.7 172 30.8
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.7e-08 63.9 40 65.0
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.7e-08 63.9 36 66.7
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.3e-08 63.5 136 38.2
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.0e-08 63.2 45 51.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 5.0e-08 62.4 152 34.2
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 6.6e-08 62.0 43 58.1
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 8.6e-08 61.6 33 69.7
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.6e-08 61.6 37 64.9
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.1e-07 61.2 53 54.7
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.5e-07 60.8 40 60.0
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.5e-07 60.8 43 58.1
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.5e-07 60.1 40 60.0
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 3.3e-07 59.7 59 40.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.3e-07 59.3 33 66.7
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.5e-07 58.2 181 33.1
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.6e-06 57.4 28 75.0
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.6e-06 57.4 164 32.9
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.6e-06 56.2 132 31.1
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 4.7e-06 55.8 127 33.1
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 6.2e-06 55.5 199 29.1


User provided reference genes

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