Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 6.4e-80 300.8 166 100.0
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.1e-74 283.5 180 90.0
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 2.1e-62 242.7 183 74.9
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 1.7e-56 223.0 185 69.7
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 2.3e-53 212.6 185 66.5
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 6.9e-50 201.1 174 60.9
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 1.5e-49 199.9 180 62.8
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 2.2e-48 196.1 180 61.7
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 4.9e-48 194.9 176 61.4
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 1.4e-47 193.4 170 62.4
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 4.2e-47 191.8 183 59.6
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 1.6e-46 189.9 176 63.6
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 1.6e-46 189.9 184 57.1
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 3.5e-46 188.7 177 60.5
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 6.0e-46 188.0 178 60.1
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 5.1e-45 184.9 171 60.8
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 8.7e-45 184.1 176 59.7
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 2.5e-44 182.6 168 61.3
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 2.5e-44 182.6 183 61.7
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 2.5e-44 182.6 176 55.1
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 3.3e-44 182.2 168 58.9
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 7.3e-44 181.0 180 62.2
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 1.3e-43 180.3 181 58.0
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 1.3e-43 180.3 175 61.7
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 2.8e-43 179.1 184 57.1
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 6.2e-43 177.9 183 56.3
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 1.1e-42 177.2 169 60.9
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 1.1e-42 177.2 177 55.9
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 1.4e-42 176.8 178 58.4
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 1.8e-42 176.4 172 57.0
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 3.1e-42 175.6 168 59.5
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 3.1e-42 175.6 169 56.8
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 1.5e-41 173.3 172 56.4
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 1.5e-41 173.3 169 58.0
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 2.0e-41 172.9 179 58.1
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 5.8e-41 171.4 171 57.3
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 7.6e-41 171.0 168 58.3
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 7.6e-41 171.0 165 58.8
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 2.9e-40 169.1 169 59.8
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 3.8e-40 168.7 168 58.9
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 4.9e-40 168.3 168 60.1
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 6.4e-40 167.9 168 57.7
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 8.4e-40 167.5 168 56.0
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 2.4e-39 166.0 173 54.3
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 2.4e-39 166.0 172 54.7
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 3.2e-39 165.6 170 56.5
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 1.2e-38 163.7 168 57.1
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 1.6e-38 163.3 180 55.0
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 7.9e-38 161.0 167 61.7
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 1.3e-37 160.2 127 66.1
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 2.3e-37 159.5 112 75.0
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 3.9e-37 158.7 178 53.9
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 3.9e-37 158.7 127 64.6
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 6.7e-37 157.9 182 52.2
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 8.7e-37 157.5 188 52.7
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 1.3e-35 153.7 168 55.4
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 2.8e-35 152.5 178 52.2
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 8.1e-35 151.0 169 57.4
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 1.4e-34 150.2 169 53.8
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 2.6e-33 146.0 190 46.3
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 1.3e-32 143.7 178 51.7
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 4.9e-32 141.7 177 52.0
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 6.5e-32 141.4 193 50.3
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 1.4e-31 140.2 131 54.2
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 1.4e-31 140.2 169 56.2
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 1.4e-31 140.2 124 55.6
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 2.5e-31 139.4 133 55.6
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 4.2e-31 138.7 122 58.2
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 5.5e-31 138.3 139 59.0
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 9.3e-31 137.5 175 52.0
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 1.6e-30 136.7 122 60.7
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 3.5e-30 135.6 133 53.4
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 4.6e-30 135.2 131 51.9
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 4.6e-30 135.2 133 51.9
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 6.0e-30 134.8 176 51.7
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 6.0e-30 134.8 166 48.8
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 1.0e-29 134.0 131 51.9
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 1.0e-29 134.0 131 51.9
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 1.0e-29 134.0 181 50.8
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 1.3e-29 133.7 134 53.0
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 3.0e-29 132.5 144 49.3
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 3.0e-29 132.5 144 49.3
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 3.0e-29 132.5 144 49.3
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 5.1e-29 131.7 133 52.6
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 6.7e-29 131.3 149 49.0
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 1.5e-25 120.2 184 52.7
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 1.5e-25 120.2 175 51.4
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 4.5e-25 118.6 145 57.2
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 5.8e-25 118.2 183 45.9
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.0e-24 117.5 180 52.8
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 5.0e-24 115.2 179 45.3
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 1.9e-23 113.2 141 53.2
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 7.1e-23 111.3 167 46.1
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 9.3e-23 110.9 175 49.7
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 3.9e-21 105.5 181 48.1
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 6.7e-21 104.8 181 46.4
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 7.4e-20 101.3 174 47.7
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 1.6e-19 100.1 182 44.0
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 3.7e-19 99.0 125 46.4
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 1.8e-18 96.7 175 41.1
CAN.G1105.2 Capsicum annuum HOM05D007386 ORTHO05D009210 5.3e-18 95.1 169 46.7
arahy.Tifrunner.gnm1.ann1.90IGTQ Arachis hypogaea HOM05D007386 ORTHO05D009210 2.6e-17 92.8 107 52.3
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.0e-13 80.9 125 48.0
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 8.8e-13 77.8 171 39.8
SEGI_27286 Sequoiadendron giganteum HOM05D007386 ORTHO05D009210 2.0e-12 76.6 75 54.7
Mapoly0035s0101 Marchantia polymorpha HOM05D007386 ORTHO05D009210 2.2e-11 73.2 188 39.4
arahy.Tifrunner.gnm1.ann1.92TB4L Arachis hypogaea HOM05D007386 ORTHO05D009210 7.7e-09 64.7 77 53.2
Cre17.g717700 Chlamydomonas reinhardtii HOM05D007386 ORTHO05D009210 3.6e-06 55.8 128 33.6


User provided reference genes

Program Settings