Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.4e-162 576.2 295 100.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.4e-162 576.2 295 100.0
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.2e-142 510.0 295 87.8
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.0e-141 506.9 295 87.5
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.3e-140 501.9 295 86.4
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 3.8e-136 488.4 295 83.1
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 1.9e-135 486.1 295 81.4
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 9.4e-135 483.8 295 81.4
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.6e-134 483.0 295 80.7
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.7e-134 482.3 317 79.2
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.4e-133 479.9 295 81.0
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 2.2e-131 472.6 295 80.3
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.3e-130 468.0 295 78.6
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 5.3e-130 468.0 295 78.6
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 3.5e-129 465.3 295 77.6
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 8.5e-128 460.7 295 78.3
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 9.4e-127 457.2 295 78.0
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.2e-126 456.8 295 77.3
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.1e-126 456.1 295 78.3
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.7e-126 455.7 295 77.6
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.6e-126 455.3 295 78.0
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 6.1e-126 454.5 295 77.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 8.0e-126 454.1 294 78.2
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.8e-125 453.0 295 75.6
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 2.3e-125 452.6 295 78.0
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 4.0e-125 451.8 295 76.9
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 5.2e-125 451.4 295 75.6
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 8.8e-125 450.7 295 78.0
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 8.8e-125 450.7 295 77.3
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.5e-124 449.9 295 75.9
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.0e-124 449.5 295 75.9
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 3.4e-124 448.7 295 78.0
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.3e-123 446.8 293 78.2
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.2e-123 446.0 294 76.9
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.8e-123 445.7 295 76.3
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.8e-123 445.7 292 76.4
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 3.7e-123 445.3 295 74.6
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 4.8e-123 444.9 295 75.6
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 6.3e-123 444.5 293 77.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 8.3e-123 444.1 295 74.2
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 8.3e-123 444.1 295 74.9
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.4e-122 443.4 295 75.3
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.8e-122 443.0 292 78.4
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.1e-122 442.2 295 74.9
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 4.1e-122 441.8 295 76.6
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 5.4e-122 441.4 295 74.2
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 5.4e-122 441.4 296 73.6
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 7.0e-122 441.0 295 76.3
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 7.0e-122 441.0 295 74.6
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 9.1e-122 440.7 295 74.2
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.2e-121 440.3 296 73.3
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.6e-121 439.9 295 75.6
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.0e-121 439.5 295 76.3
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 2.7e-121 439.1 299 73.6
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.5e-121 438.7 294 77.2
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 7.7e-121 437.6 295 74.9
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.3e-120 436.8 295 74.2
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.3e-120 436.8 297 74.1
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.7e-120 436.4 295 74.2
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.3e-120 436.0 297 74.1
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 2.9e-120 435.6 329 69.3
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.9e-120 435.6 295 73.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 5.0e-120 434.9 295 75.3
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 6.6e-120 434.5 307 72.3
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 6.6e-120 434.5 307 72.3
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.9e-119 433.0 297 74.4
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.5e-119 432.6 298 72.8
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 9.5e-119 430.6 307 72.3
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 9.5e-119 430.6 295 73.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.2e-118 430.3 295 73.6
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.2e-118 430.3 296 72.0
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.8e-118 429.1 295 72.2
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.7e-118 428.3 325 68.9
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.7e-118 428.3 321 70.1
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.8e-117 426.4 353 64.9
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 2.3e-117 426.0 330 69.7
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 3.4e-116 422.2 321 68.8
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 5.7e-116 421.4 296 71.6
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 1.3e-115 420.2 296 70.9
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 6.3e-115 417.9 295 72.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 2.4e-114 416.0 306 70.6
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.2e-113 413.7 271 76.0
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.5e-113 411.8 293 70.3
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.7e-112 409.8 295 71.5
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 3.8e-112 408.7 301 73.1
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.5e-111 406.0 295 71.9
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.5e-111 406.0 297 70.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 3.3e-111 405.6 286 74.1
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 5.6e-111 404.8 295 71.2
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.1e-110 401.4 298 69.5
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 8.0e-110 401.0 296 67.6
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 8.9e-109 397.5 297 67.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.3e-107 393.7 297 69.4
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.2e-107 392.9 295 68.5
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 6.4e-107 391.3 297 68.4
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.1e-106 390.6 298 69.8
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.4e-106 389.4 296 67.9
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.2e-106 389.0 295 70.8
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 3.5e-105 385.6 238 79.0
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.0e-104 382.5 297 67.7
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.6e-104 381.3 294 66.0
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 8.6e-104 380.9 311 63.3
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.5e-103 380.2 287 70.4
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 3.3e-103 379.0 299 68.2
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.6e-102 376.7 240 75.0
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.4e-101 373.6 279 68.8
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 8.9e-101 370.9 340 61.5
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 8.9e-101 370.9 241 75.5
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 1.2e-100 370.5 296 64.2
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.4e-100 369.0 295 63.4
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 7.5e-100 367.9 291 68.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.3e-99 367.1 290 67.9
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.2e-97 360.5 296 65.9
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.6e-97 360.1 296 64.2
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.0e-96 355.9 238 74.8
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.6e-92 342.8 217 83.9
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.3e-88 330.5 205 82.4
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.7e-88 330.1 318 60.1
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.3e-88 329.7 295 62.0
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.1e-88 328.6 295 60.0
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 4.4e-84 315.5 307 55.0
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.7e-83 313.5 295 58.6
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.2e-83 313.2 296 60.1
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 6.4e-83 311.6 197 76.6
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 6.6e-80 301.6 304 54.6
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.1e-79 300.8 255 63.1
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.3e-79 299.3 295 57.6
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.6e-78 295.8 280 62.1
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 8.1e-78 294.7 207 71.5
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 8.1e-78 294.7 297 53.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.6e-76 289.7 207 70.0
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.8e-75 285.8 278 55.8
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.9e-74 283.5 291 56.0
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.7e-73 279.6 289 53.3
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 7.8e-73 278.1 208 67.3
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 6.6e-72 275.0 250 56.4
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.1e-69 266.2 370 45.4
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.5e-68 263.8 329 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.7e-67 260.4 220 58.2
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.7e-64 248.4 199 62.8
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 7.6e-60 235.0 317 41.6
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.9e-58 230.3 179 68.2
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 3.3e-55 219.5 333 41.1
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.1e-47 194.5 125 76.0
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.4e-45 186.8 339 36.6
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 3.8e-35 152.9 90 84.4
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.4e-32 144.4 101 72.3
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 5.7e-31 139.0 310 33.2
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.7e-30 136.3 80 76.2
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.3e-24 117.1 101 59.4
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.0e-24 116.7 83 71.1
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 5.7e-23 112.5 60 90.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.3e-22 111.3 231 39.0
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.6e-20 103.6 265 37.7
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.9e-18 97.4 142 45.8
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.6e-17 94.4 334 27.8
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.4e-15 86.7 56 82.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.1e-09 67.4 42 71.4
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.0e-08 65.1 38 73.7
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.3e-06 58.2 105 38.1


User provided reference genes

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