Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.1e-101 373.2 183 100.0
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 3.2e-48 195.7 103 89.3
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 2.1e-47 193.0 101 91.1
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 3.5e-47 192.2 97 92.8
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 6.0e-47 191.4 98 90.8
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 1.0e-46 190.7 96 92.7
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.3e-46 190.3 96 92.7
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 1.3e-46 190.3 97 90.7
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 2.3e-46 189.5 97 89.7
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 3.0e-46 189.1 96 90.6
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 3.9e-46 188.7 96 89.6
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 5.1e-46 188.3 105 85.7
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 6.6e-46 188.0 98 87.8
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 6.6e-46 188.0 97 88.7
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 6.6e-46 188.0 96 91.7
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 8.7e-46 187.6 96 89.6
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 8.7e-46 187.6 98 88.8
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 8.7e-46 187.6 96 90.6
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 1.1e-45 187.2 98 88.8
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 1.1e-45 187.2 96 89.6
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 1.1e-45 187.2 97 87.6
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 1.5e-45 186.8 96 89.6
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 1.5e-45 186.8 96 89.6
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 1.9e-45 186.4 96 88.5
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 2.5e-45 186.0 96 89.6
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 2.5e-45 186.0 96 88.5
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 2.5e-45 186.0 97 88.7
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 3.3e-45 185.7 94 92.6
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 3.3e-45 185.7 98 86.7
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 89.6
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 89.6
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 90.6
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 3.3e-45 185.7 97 88.7
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.3e-45 185.7 97 88.7
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.3e-45 185.7 97 88.7
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 90.6
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 89.6
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 89.6
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 3.3e-45 185.7 96 89.6
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 4.3e-45 185.3 96 88.5
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 4.3e-45 185.3 97 90.7
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 5.6e-45 184.9 96 89.6
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 5.6e-45 184.9 98 87.8
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 5.6e-45 184.9 96 89.6
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 5.6e-45 184.9 96 89.6
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 5.6e-45 184.9 95 90.5
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 7.3e-45 184.5 95 90.5
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 9.6e-45 184.1 94 91.5
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 9.6e-45 184.1 96 88.5
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 9.6e-45 184.1 97 87.6
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 1.2e-44 183.7 98 85.7
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 1.2e-44 183.7 96 88.5
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 1.2e-44 183.7 96 87.5
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 1.6e-44 183.3 96 90.6
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.6e-44 183.3 97 87.6
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 2.1e-44 183.0 95 89.5
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 2.8e-44 182.6 98 85.7
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 3.6e-44 182.2 97 88.7
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 3.6e-44 182.2 95 88.4
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 4.7e-44 181.8 96 87.5
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 4.7e-44 181.8 97 86.6
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 4.7e-44 181.8 94 91.5
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 4.7e-44 181.8 96 88.5
MBI02_g20483_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 6.2e-44 181.4 130 69.2
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 8.1e-44 181.0 95 88.4
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 1.1e-43 180.6 98 86.7
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 1.4e-43 180.3 96 86.5
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 1.4e-43 180.3 96 86.5
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 1.4e-43 180.3 96 86.5
Nitab4.5_0001195g0050 Nicotiana tabacum HOM05D005637 ORTHO05D006983 1.8e-43 179.9 96 86.5
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 1.8e-43 179.9 96 86.5
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 1.8e-43 179.9 96 85.4
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 1.8e-43 179.9 94 89.4
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 1.8e-43 179.9 94 89.4
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 1.8e-43 179.9 96 85.4
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 3.1e-43 179.1 94 89.4
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 3.1e-43 179.1 94 89.4
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 3.1e-43 179.1 105 80.0
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 3.1e-43 179.1 96 84.4
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 5.2e-43 178.3 94 88.3
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 5.2e-43 178.3 94 88.3
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 5.2e-43 178.3 94 88.3
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 5.2e-43 178.3 94 88.3
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 9.0e-43 177.6 94 87.2
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 2.0e-42 176.4 96 85.4
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 9.9e-42 174.1 90 90.0
EL10Ac5g11048 Beta vulgaris HOM05D005637 ORTHO05D006983 1.4e-40 170.2 98 79.6
CBR_g30502 Chara braunii HOM05D005637 ORTHO05D006983 1.9e-40 169.9 97 82.5
Ah.02g113660 Amaranthus hybridus HOM05D005637 ORTHO05D006983 9.3e-40 167.5 97 81.4
LjContig00103g0026967 Lotus japonicus HOM05D005637 ORTHO05D006983 1.2e-39 167.2 140 65.0
Atru.chr9.197 Acer truncatum HOM05D005637 ORTHO05D006983 7.8e-39 164.5 111 74.8
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 6.6e-38 161.4 82 90.2
AUR62008440 Chenopodium quinoa HOM05D005637 ORTHO05D006983 8.7e-38 161.0 98 75.5
HanXRQChr04g0107301 Helianthus annuus HOM05D005637 ORTHO05D006983 1.1e-37 160.6 110 73.6
MBI04_g11434_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 1.1e-37 160.6 96 79.2
AUR62021650 Chenopodium quinoa HOM05D005637 ORTHO05D006983 1.1e-35 154.1 91 76.9
Ah.02g113670 Amaranthus hybridus HOM05D005637 ORTHO05D006983 2.4e-35 152.9 85 82.4
Sabra10G0125900 Salix brachista HOM05D005637 ORTHO05D006983 1.1e-32 144.1 136 56.6
CSS0006784 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.8e-30 136.7 97 73.2
BcaC06g35140 Brassica carinata HOM05D005637 ORTHO05D006983 3.7e-28 129.0 104 65.4
CSS0007590 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.8e-27 126.7 131 56.5
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 1.5e-26 123.6 98 66.3
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 1.3e-25 120.6 217 36.4
CSS0019959 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.9e-25 118.6 63 87.3
TAR365G0307 Trochodendron aralioides HOM05D005637 ORTHO05D006983 6.0e-23 111.7 58 86.2
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 7.9e-23 111.3 96 59.4
LjContig00261g0007071 Lotus japonicus HOM05D005637 ORTHO05D006983 1.5e-21 107.1 80 66.2
Sed0018902 Sechium edule HOM05D005637 ORTHO05D006983 1.6e-20 103.6 63 76.2
BcaC01g01741 Brassica carinata HOM05D005637 ORTHO05D006983 6.2e-20 101.7 51 88.2
C03p72380 Brassica napus HOM05D005637 ORTHO05D006983 2.4e-19 99.8 51 86.3
BolC3t19533H Brassica oleracea HOM05D005637 ORTHO05D006983 2.4e-19 99.8 51 86.3
Manes.06G090201 Manihot esculenta HOM05D005637 ORTHO05D006983 9.0e-19 97.8 53 86.8
Aa31LG7G8540 Aethionema arabicum HOM05D005637 ORTHO05D006983 4.5e-18 95.5 48 89.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 7.6e-18 94.7 49 87.8
CSS0040245 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.3e-17 94.0 49 89.8
BolC7t42459H Brassica oleracea HOM05D005637 ORTHO05D006983 1.4e-16 90.5 57 77.2
arahy.Tifrunner.gnm1.ann1.DXDM30 Arachis hypogaea HOM05D005637 ORTHO05D006983 1.9e-16 90.1 48 85.4
C07p19400 Brassica napus HOM05D005637 ORTHO05D006983 1.9e-16 90.1 57 77.2
BcaB03g12359 Brassica carinata HOM05D005637 ORTHO05D006983 1.2e-15 87.4 44 88.6
BcaB04g17310 Brassica carinata HOM05D005637 ORTHO05D006983 1.2e-15 87.4 44 88.6
CSS0044710 Camellia sinensis var. sinensis HOM05D068120 ORTHO05D006983 1.0e-09 67.8 85 45.9
CSS0009360 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.8e-09 65.9 39 79.5
CSS0048520 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 5.0e-09 65.5 33 87.9
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 7.2e-08 61.6 47 59.6
Pp3c15_19380 Physcomitrium patens HOM05D005637 ORTHO05D308751 7.2e-08 61.6 92 42.4
MD16G1068800 Malus domestica HOM05D005637 ORTHO05D006983 1.0e-06 57.8 25 100.0
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 3.9e-06 55.8 58 46.6
CDE05G3463 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 8.8e-06 54.7 103 33.0


User provided reference genes

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