Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 8.1e-172 607.1 325 100.0
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 4.7e-87 325.5 340 58.2
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.9e-80 303.5 341 55.1
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.4e-78 297.4 340 60.0
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.6e-77 293.1 341 59.8
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.8e-70 270.4 361 47.4
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 6.4e-68 261.9 286 54.2
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 8.4e-68 261.5 362 50.6
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.4e-67 260.8 401 43.1
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.2e-66 257.7 398 47.2
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 2.1e-66 256.9 386 48.7
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 7.8e-66 255.0 393 46.3
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.0e-65 254.6 358 48.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.3e-65 253.4 401 43.1
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 2.3e-65 253.4 428 45.1
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.0e-65 253.1 357 49.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 3.9e-65 252.7 400 47.5
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.9e-65 252.7 357 46.5
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.9e-65 252.7 369 45.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 6.6e-65 251.9 382 49.2
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 6.6e-65 251.9 403 43.7
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.1e-64 251.1 390 48.2
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 5.6e-64 248.8 357 45.4
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 9.6e-64 248.1 407 45.9
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.4e-62 244.2 348 46.6
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.4e-62 243.4 403 46.7
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 4.0e-62 242.7 397 44.6
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 5.3e-62 242.3 406 45.3
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 9.0e-62 241.5 376 42.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.9e-61 238.0 397 45.8
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.9e-61 238.0 397 45.8
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.2e-60 236.9 376 42.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 6.4e-60 235.3 373 44.0
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.1e-59 234.6 427 41.2
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.1e-59 234.6 379 44.6
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.4e-59 234.2 370 42.4
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.9e-59 233.8 407 45.2
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.9e-59 233.8 318 51.9
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 7.1e-59 231.9 377 45.4
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.3e-59 231.5 313 50.2
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.6e-58 230.7 353 51.3
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 6.0e-58 228.8 313 49.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.3e-57 227.6 412 43.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.9e-57 226.1 407 40.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 5.1e-57 225.7 397 43.3
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 6.7e-57 225.3 393 44.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-56 224.6 407 42.5
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.5e-56 224.2 398 39.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-56 223.8 414 41.5
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.5e-56 223.4 405 40.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.5e-56 223.4 405 40.0
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.3e-56 222.6 329 42.6
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.3e-56 222.6 329 42.6
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.6e-55 220.7 414 41.5
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 2.1e-55 220.3 415 41.4
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-55 220.3 415 41.4
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.8e-54 217.2 400 44.0
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 4.0e-54 216.1 392 42.3
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.3e-54 215.7 407 38.8
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.3e-52 211.1 355 50.7
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 8.4e-52 208.4 349 40.4
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 4.2e-51 206.1 416 41.8
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 5.5e-51 205.7 381 39.6
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 2.1e-50 203.8 392 45.9
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.5e-50 203.0 416 43.0
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 6.0e-50 202.2 324 48.5
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.3e-49 201.1 395 43.8
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.8e-49 200.7 342 41.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.3e-49 200.3 417 43.2
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 3.9e-49 199.5 342 48.8
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 3.9e-49 199.5 342 48.8
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-48 198.0 418 42.6
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.1e-48 198.0 340 41.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.9e-48 197.2 242 52.9
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.3e-48 196.4 402 38.8
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.3e-48 196.4 352 39.8
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 7.4e-48 195.3 414 35.5
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 6.2e-47 192.2 324 41.7
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.4e-46 190.3 332 43.7
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.4e-46 190.3 385 43.1
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.3e-46 189.1 381 41.7
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.3e-46 189.1 381 41.7
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 6.9e-46 188.7 417 35.0
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 7.6e-45 185.3 249 47.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.0e-44 184.9 337 45.1
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.5e-43 180.3 359 42.3
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 3.2e-43 179.9 390 40.8
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.2e-43 179.9 323 37.5
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.3e-43 178.3 386 43.5
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.6e-42 177.6 440 37.3
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 2.1e-42 177.2 199 54.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 7.9e-42 175.3 379 41.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-41 174.5 359 40.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.1e-40 171.4 381 41.7
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.4e-40 168.7 363 37.2
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 9.6e-40 168.3 395 41.5
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.6e-40 168.3 357 37.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.4e-38 164.5 363 36.6
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 4.1e-38 162.9 366 44.3
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.0e-38 161.8 344 38.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 9.0e-38 161.8 344 38.1
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.5e-37 161.0 320 36.6
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-36 158.3 344 39.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-36 158.3 344 39.8
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.7e-36 157.5 242 41.3
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.1e-35 154.8 357 34.5
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.5e-35 152.5 343 37.3
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.9e-33 146.4 471 34.6
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.7e-33 145.2 241 48.1
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.9e-32 144.1 453 35.5
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.5e-32 143.7 372 34.7
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 4.3e-32 142.9 345 34.8
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.7e-31 139.8 396 32.8
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.1e-30 136.3 335 34.6
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.7e-28 131.0 401 36.7
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.9e-28 130.2 336 32.1
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 6.5e-28 129.0 401 36.2
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 8.5e-28 128.6 402 31.6
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 8.5e-28 128.6 446 33.6
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 4.2e-27 126.3 466 32.2
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 9.4e-27 125.2 355 32.4
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-26 124.4 383 31.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-26 124.4 419 30.5
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 3.6e-26 123.2 419 30.3
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 7.9e-26 122.1 418 29.9
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 1.0e-25 121.7 424 30.4
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 3.0e-25 120.2 278 36.7
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 8.8e-25 118.6 424 29.0
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.6e-24 117.1 423 28.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 4.4e-24 116.3 237 39.7
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.7e-23 114.4 256 44.1
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.7e-23 114.4 418 28.9
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 5.3e-22 109.4 240 44.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 9.1e-22 108.6 371 29.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 9.1e-22 108.6 239 47.3
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.0e-21 107.5 267 35.2
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.6e-21 107.1 321 36.4
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 5.9e-21 105.9 213 38.0
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.2e-20 104.0 398 31.7
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.4e-19 101.3 395 30.9
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.5e-19 100.5 418 33.5
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 4.2e-19 99.8 385 29.1
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 2.1e-18 97.4 99 52.5
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 3.6e-18 96.7 422 30.6
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 7.9e-18 95.5 183 39.9
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 3.9e-17 93.2 412 27.4
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.1e-14 83.6 147 41.5
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 3.1e-14 83.6 304 29.3
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 9.1e-14 82.0 271 28.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.2e-10 71.6 405 24.4
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.3e-08 63.5 222 32.0
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 3.3e-08 63.5 252 29.4


User provided reference genes

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