Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.0e-137 493.4 247 100.0
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 2.3e-102 375.9 190 98.4
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.3e-102 375.9 190 98.4
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 6.7e-102 374.4 188 97.9
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 8.8e-102 374.0 190 97.4
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 8.8e-102 374.0 190 97.4
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.1e-101 373.6 190 97.4
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.6e-101 372.5 190 97.4
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.6e-101 372.5 190 96.8
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.3e-101 372.1 190 96.3
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 3.3e-101 372.1 190 96.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.4e-101 371.7 190 96.8
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.4e-101 371.7 190 97.4
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 5.7e-101 371.3 190 96.8
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 9.7e-101 370.5 190 96.8
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 9.7e-101 370.5 190 96.3
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.3e-100 370.2 190 96.3
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.3e-100 370.2 190 96.3
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.3e-100 370.2 190 96.3
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.3e-100 370.2 190 95.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.3e-100 370.2 190 96.3
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.3e-100 370.2 190 96.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.7e-100 369.8 190 96.3
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.7e-100 369.8 190 95.8
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.2e-100 369.4 190 95.8
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.8e-100 369.0 190 95.8
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 3.7e-100 368.6 190 95.3
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.7e-100 368.6 190 96.3
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 4.8e-100 368.2 190 95.3
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.8e-100 368.2 190 95.8
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 4.8e-100 368.2 190 95.8
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.8e-100 368.2 190 95.3
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 6.3e-100 367.9 190 95.3
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 8.2e-100 367.5 190 95.3
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 8.2e-100 367.5 190 95.3
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 8.2e-100 367.5 190 94.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.1e-99 367.1 190 94.7
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.1e-99 367.1 190 95.8
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.1e-99 367.1 190 95.8
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-99 366.7 190 94.7
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-99 366.7 190 94.7
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.8e-99 366.3 190 94.7
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.8e-99 366.3 190 94.7
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.8e-99 366.3 190 94.7
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.4e-99 365.9 196 92.9
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.1e-99 365.5 190 94.2
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 3.1e-99 365.5 190 94.7
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 4.1e-99 365.2 186 96.2
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 5.3e-99 364.8 190 94.2
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 5.3e-99 364.8 190 95.3
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 5.3e-99 364.8 190 95.3
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 5.3e-99 364.8 194 90.7
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 5.3e-99 364.8 190 93.7
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 5.3e-99 364.8 190 95.3
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 5.3e-99 364.8 190 95.3
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 9.1e-99 364.0 190 94.2
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.2e-98 363.6 190 95.3
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 2.0e-98 362.8 190 93.7
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.6e-98 362.5 191 93.7
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 4.5e-98 361.7 190 94.2
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 4.5e-98 361.7 190 93.7
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 5.9e-98 361.3 190 94.7
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.0e-97 360.5 188 94.1
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.3e-97 360.1 188 95.2
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.7e-97 359.8 190 94.2
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 2.2e-97 359.4 193 91.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 2.2e-97 359.4 190 94.2
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.9e-97 359.0 190 94.7
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 5.0e-97 358.2 190 93.2
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 6.5e-97 357.8 185 96.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 8.5e-97 357.5 190 91.1
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.1e-96 357.1 184 95.7
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.5e-96 356.7 187 92.0
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.5e-96 355.9 187 92.5
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.5e-96 355.9 190 92.1
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 4.2e-96 355.1 190 91.6
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.1e-95 352.8 190 91.1
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.1e-95 352.8 190 91.1
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.1e-95 352.8 190 91.1
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.1e-95 352.8 190 91.1
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.1e-95 352.8 190 91.1
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.6e-95 352.1 190 90.0
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.7e-95 351.7 187 91.4
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 4.7e-95 351.7 190 90.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 6.1e-95 351.3 190 88.9
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 8.0e-95 350.9 192 91.7
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 1.4e-94 350.1 190 90.0
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.4e-94 350.1 190 90.0
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.8e-94 349.7 192 91.1
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.2e-94 348.2 190 88.9
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 5.2e-94 348.2 186 87.6
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 8.8e-94 347.4 190 87.4
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.5e-93 346.7 190 87.9
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.6e-93 345.9 190 88.4
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.6e-93 345.9 190 91.6
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 3.4e-93 345.5 190 88.9
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.4e-93 345.5 185 88.6
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 4.4e-93 345.1 199 86.9
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 7.5e-93 344.4 190 88.4
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 7.5e-93 344.4 186 91.9
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 9.8e-93 344.0 190 88.4
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 9.8e-93 344.0 190 87.4
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 9.8e-93 344.0 185 88.1
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-91 340.5 190 87.9
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.4e-91 340.1 187 87.2
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 5.4e-91 338.2 217 79.7
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 3.5e-90 335.5 190 91.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.0e-89 334.0 222 78.4
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.2e-85 320.5 193 80.3
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.0e-85 319.7 190 79.5
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 5.7e-85 318.2 165 95.8
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.7e-85 318.2 190 78.9
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.7e-85 318.2 190 78.9
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 2.8e-84 315.8 162 96.3
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 4.9e-84 315.1 196 76.0
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.4e-83 313.5 165 93.9
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 5.4e-83 311.6 190 83.7
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 9.1e-83 310.8 164 95.1
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 7.7e-82 307.8 172 86.0
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 2.8e-79 299.3 164 89.6
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.5e-77 293.5 193 73.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 7.5e-77 291.2 194 79.9
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 5.0e-73 278.5 190 76.8
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.6e-66 256.9 190 71.1
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 8.9e-62 241.1 123 96.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 9.8e-61 237.7 318 46.5
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.6e-58 230.3 123 90.2
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 3.0e-57 226.1 154 68.8
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.4e-51 207.2 123 78.9
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.6e-40 168.7 96 83.3
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 8.1e-39 164.9 89 92.1
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.7e-28 130.6 69 91.3
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-26 124.4 113 60.2
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 4.8e-23 112.5 62 79.0
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.8e-20 102.8 124 51.6
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 5.5e-19 99.0 152 42.1
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.1e-15 87.0 81 55.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.1e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.0e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.2e-12 77.0 79 50.6
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.4e-11 74.3 49 73.5
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.7e-10 70.1 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 6.3e-07 58.9 26 100.0


User provided reference genes

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