Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.5e-112 408.3 208 100.0
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.3e-111 406.4 208 99.5
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 6.0e-51 204.9 224 55.4
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.7e-50 203.4 223 59.2
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 5.0e-50 201.8 223 56.5
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.5e-49 200.3 217 55.3
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.3e-45 187.2 223 55.2
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 4.9e-45 185.3 224 50.9
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.9e-44 183.3 213 57.7
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.4e-44 183.0 220 53.6
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.1e-43 179.9 193 56.0
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.7e-43 179.5 189 57.7
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 3.5e-43 179.1 225 49.8
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 3.5e-43 179.1 231 52.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.6e-43 178.7 228 51.8
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.8e-43 177.9 210 56.2
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.3e-42 177.2 220 52.7
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 5.6e-41 171.8 220 50.9
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.2e-40 170.6 212 57.1
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 2.1e-40 169.9 220 50.0
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.6e-40 169.1 211 53.6
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.7e-40 168.7 218 49.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 8.1e-40 167.9 224 49.6
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.8e-39 166.8 227 49.3
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.3e-39 166.4 205 54.1
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.5e-38 163.7 211 53.6
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.0e-38 163.3 227 48.0
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.6e-38 162.9 226 48.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 4.4e-38 162.2 228 49.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 5.8e-38 161.8 223 47.5
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-37 160.6 209 52.2
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.7e-37 160.2 220 50.5
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.9e-37 159.5 217 49.8
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.9e-37 158.7 209 51.7
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 6.4e-37 158.3 225 50.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 6.4e-37 158.3 210 50.0
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 3.2e-36 156.0 209 51.7
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.1e-36 155.6 147 61.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.1e-36 155.6 210 51.9
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.1e-36 155.6 208 49.5
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 5.4e-36 155.2 224 47.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 9.2e-36 154.5 213 49.3
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.6e-35 153.7 222 48.2
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.6e-35 153.7 224 46.9
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.1e-35 153.3 225 48.4
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.1e-35 153.3 225 48.4
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.7e-35 152.9 224 47.8
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.7e-35 152.9 211 48.8
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.8e-35 151.4 225 48.4
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-33 147.5 220 48.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.5e-33 147.1 199 47.2
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.3e-33 146.0 210 46.2
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 3.3e-33 146.0 213 48.8
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 7.3e-33 144.8 221 43.9
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 9.5e-33 144.4 230 44.3
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.6e-32 143.7 220 48.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.2e-32 141.7 144 60.4
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.2e-32 141.7 208 48.6
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 8.1e-32 141.4 211 47.9
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.1e-32 141.4 211 47.9
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.1e-31 141.0 223 45.3
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.4e-31 139.8 232 43.1
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 5.2e-31 138.7 236 44.9
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.5e-30 137.1 224 43.3
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-30 137.1 209 45.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.4e-30 136.0 208 48.1
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.4e-30 136.0 208 48.1
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 5.8e-30 135.2 233 42.5
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 3.8e-29 132.5 225 42.7
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 7.1e-28 128.3 246 43.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.1e-27 126.7 244 42.6
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.7e-27 126.3 231 40.7
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.7e-27 126.3 205 44.4
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.5e-27 125.9 230 41.3
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 6.0e-27 125.2 135 59.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.3e-26 123.2 233 41.6
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.0e-26 122.9 207 46.9
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.1e-26 122.1 227 42.7
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.6e-26 121.7 227 42.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.7e-26 121.3 227 41.4
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.5e-25 120.6 217 42.9
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.9e-25 120.2 216 45.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.9e-25 120.2 203 42.9
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.5e-25 119.8 214 39.7
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 3.3e-25 119.4 223 42.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.6e-24 117.1 212 39.2
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.6e-24 117.1 220 41.8
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.6e-24 117.1 203 42.4
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.8e-24 116.3 223 40.8
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-23 114.4 215 40.9
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.1e-23 114.4 223 40.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.4e-23 114.0 227 40.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 4.0e-23 112.5 211 41.7
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 6.9e-23 111.7 219 38.8
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 9.0e-23 111.3 148 50.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.2e-22 110.9 145 49.7
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.5e-22 110.5 210 38.1
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.5e-22 110.5 215 40.9
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 3.4e-22 109.4 199 42.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 4.4e-22 109.0 214 39.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-21 107.5 207 40.1
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.7e-21 107.1 211 41.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.9e-21 106.3 146 50.0
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.2e-20 102.8 209 40.7
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 1.2e-19 100.9 207 38.2
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.1e-19 100.1 126 48.4
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 3.5e-19 99.4 228 39.0
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.6e-19 99.0 211 39.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.0e-19 98.6 207 38.6
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.0e-18 97.8 234 38.9
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.6e-18 95.1 207 38.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.9e-17 93.6 140 48.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.6e-17 92.0 227 37.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 9.6e-17 91.3 227 37.4
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 9.6e-17 91.3 218 33.5
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.6e-16 90.5 215 36.3
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-16 90.5 215 36.3
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.6e-16 90.5 215 36.3
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.6e-16 90.5 144 47.2
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.1e-16 90.1 218 37.6
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.8e-16 89.7 121 50.4
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.6e-16 89.4 201 35.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 8.1e-16 88.2 215 34.4
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 8.1e-16 88.2 215 34.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.1e-15 87.8 218 34.9
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.4e-15 87.4 212 38.2
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 4.0e-15 85.9 121 44.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 5.3e-15 85.5 141 47.5
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 6.9e-15 85.1 210 36.7
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.9e-15 85.1 157 39.5
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.2e-14 84.3 121 44.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.5e-14 84.0 238 33.2
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-14 84.0 220 33.6
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.0e-14 83.6 132 44.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.6e-14 83.2 121 44.6
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 7.6e-14 81.6 143 46.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 7.6e-14 81.6 172 35.5
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 9.9e-14 81.3 143 40.6
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 9.9e-14 81.3 121 43.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 9.9e-14 81.3 121 43.0
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 9.9e-14 81.3 121 43.0
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 9.9e-14 81.3 121 43.0
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.7e-13 80.5 215 35.8
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.9e-13 79.7 218 33.9
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 3.8e-13 79.3 227 35.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 6.4e-13 78.6 121 42.1
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 8.4e-13 78.2 159 38.4
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 8.4e-13 78.2 159 38.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.1e-12 77.8 222 35.6
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.4e-12 77.4 158 38.6
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.4e-12 76.6 158 39.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 4.2e-12 75.9 155 40.0
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.2e-11 74.3 148 37.8
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.2e-11 74.3 49 75.5
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 2.1e-11 73.6 217 34.1
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 4.6e-11 72.4 88 48.9
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 4.6e-11 72.4 127 37.8
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.8e-10 70.5 103 44.7
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.7e-10 68.2 220 33.6
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.5e-09 67.4 203 30.5
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.6e-09 65.5 214 35.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.8e-08 63.2 68 52.9
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 3.7e-08 62.8 244 29.9
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.1e-07 61.2 236 30.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.1e-07 61.2 65 52.3
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.8e-07 60.5 144 34.7
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.8e-07 60.5 42 71.4
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 1.8e-07 60.5 201 30.8
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.5e-06 57.4 47 63.8
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.0e-06 57.0 39 71.8
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.0e-06 57.0 39 71.8
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 3.4e-06 56.2 78 44.9
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 7.6e-06 55.1 82 43.9
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 7.6e-06 55.1 248 28.2
COL.COLO4_12250 Corchorus olitorius HOM05D001536 ORTHO05D001442 9.9e-06 54.7 53 47.2
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 9.9e-06 54.7 159 30.2
Zm00001eb020730 Zea mays HOM05D004032 ORTHO05D004462 9.9e-06 54.7 38 71.1


User provided reference genes

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