Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.8e-85 318.2 163 100.0
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 8.5e-53 210.7 181 65.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 3.2e-52 208.8 183 63.4
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 3.0e-50 202.2 186 62.4
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.9e-50 201.8 178 64.0
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 3.3e-49 198.7 181 63.5
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.4e-47 193.4 181 61.3
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 9.1e-47 190.7 169 60.9
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.2e-46 190.3 183 58.5
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.7e-45 186.4 186 57.5
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.5e-45 184.1 191 56.5
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.2e-43 180.3 186 55.4
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.8e-42 176.4 165 56.4
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.2e-41 173.7 174 56.3
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.5e-41 173.3 174 55.7
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 1.5e-41 173.3 164 57.3
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.0e-41 172.9 167 55.1
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 2.0e-41 172.9 160 57.5
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 4.4e-41 171.8 174 56.9
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 4.4e-41 171.8 174 56.9
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 9.7e-41 170.6 175 54.9
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.3e-40 170.2 174 56.9
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 1.3e-40 170.2 163 55.2
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.7e-40 169.9 174 56.3
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.7e-40 169.9 170 54.7
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 2.2e-40 169.5 175 56.6
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 2.8e-40 169.1 174 55.7
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 4.8e-40 168.3 173 52.0
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 8.3e-40 167.5 173 55.5
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.1e-39 167.2 173 52.0
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.1e-39 167.2 177 52.5
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.4e-39 166.8 164 56.7
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.8e-39 166.4 169 56.2
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.8e-39 166.4 184 52.2
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.8e-39 166.4 168 55.4
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 2.4e-39 166.0 172 51.7
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 2.4e-39 166.0 172 55.2
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 4.1e-39 165.2 172 52.9
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.1e-39 165.2 164 56.7
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 5.3e-39 164.9 167 54.5
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 5.3e-39 164.9 180 51.7
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 7.0e-39 164.5 180 52.8
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 7.0e-39 164.5 174 55.7
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 9.1e-39 164.1 164 56.7
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 9.1e-39 164.1 170 51.8
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 9.1e-39 164.1 170 51.8
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.2e-38 163.7 180 51.7
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 1.6e-38 163.3 177 53.1
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.0e-38 162.9 176 52.8
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.0e-38 162.9 170 53.5
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 2.7e-38 162.5 168 53.0
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 3.5e-38 162.2 176 53.4
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.5e-38 162.2 170 50.0
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 7.7e-38 161.0 170 51.2
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.0e-37 160.6 160 56.2
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.7e-37 159.8 171 52.6
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.9e-37 159.1 178 50.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 3.8e-37 158.7 168 53.0
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 6.5e-37 157.9 169 53.8
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 6.5e-37 157.9 170 50.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 2.5e-36 156.0 173 53.8
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 4.2e-36 155.2 179 50.8
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 7.2e-36 154.5 186 45.7
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 1.6e-35 153.3 164 53.7
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 4.7e-35 151.8 175 52.0
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 4.7e-35 151.8 169 51.5
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 2.3e-34 149.4 173 48.0
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 2.3e-34 149.4 181 49.2
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 3.0e-34 149.1 177 52.0
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.0e-34 148.7 168 48.2
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 5.2e-34 148.3 172 50.6
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 5.2e-34 148.3 175 49.7
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 8.8e-34 147.5 177 50.8
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.2e-33 147.1 174 47.7
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.6e-33 146.0 171 50.3
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 3.4e-33 145.6 172 51.7
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 9.8e-33 144.1 181 51.4
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 2.2e-32 142.9 179 48.6
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 3.7e-32 142.1 173 46.2
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.4e-31 140.2 172 48.8
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 2.4e-31 139.4 180 47.2
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 2.4e-31 139.4 179 48.6
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.2e-30 137.1 170 47.1
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.0e-30 136.3 170 45.9
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 5.9e-30 134.8 181 48.1
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 5.9e-30 134.8 185 47.0
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 7.7e-30 134.4 178 42.1
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.3e-29 133.7 174 43.1
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 2.3e-29 132.9 176 44.3
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 5.0e-29 131.7 168 47.0
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.0e-29 131.7 177 45.8
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 2.5e-28 129.4 181 46.4
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.5e-28 129.4 180 45.6
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.3e-28 129.0 154 48.1
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 7.2e-28 127.9 179 45.8
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 6.1e-27 124.8 176 39.8
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.4e-26 123.6 173 40.5
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.4e-26 123.6 166 41.0
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.4e-26 123.6 173 43.9
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.8e-26 123.2 124 56.5
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.4e-25 119.0 176 44.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 7.5e-25 117.9 163 43.6
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 7.5e-25 117.9 163 43.6
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 4.9e-24 115.2 109 59.6
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 6.3e-24 114.8 163 41.1
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 8.3e-24 114.4 171 41.5
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.1e-23 114.0 163 42.3
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.4e-23 113.6 159 41.5
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.8e-23 113.2 163 39.3
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.4e-23 112.8 159 41.5
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 2.4e-23 112.8 171 40.4
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.4e-23 112.8 163 38.7
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 4.1e-23 112.1 163 39.9
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 7.0e-23 111.3 175 38.9
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 7.0e-23 111.3 171 40.9
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 7.0e-23 111.3 171 40.9
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 7.0e-23 111.3 168 38.7
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.6e-22 110.2 163 39.9
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 2.0e-22 109.8 169 39.6
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 4.5e-22 108.6 163 39.9
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 5.9e-22 108.2 171 38.0
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 5.9e-22 108.2 120 49.2
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 1.7e-21 106.7 171 39.8
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 1.7e-21 106.7 163 39.9
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.3e-21 106.3 134 43.3
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 5.0e-21 105.1 110 56.4
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-20 103.6 163 38.7
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.9e-20 103.2 169 38.5
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.5e-20 102.8 126 50.0
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 3.3e-20 102.4 171 43.3
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 5.6e-20 101.7 118 45.8
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.1e-19 99.8 170 38.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 2.8e-19 99.4 163 37.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 4.7e-19 98.6 168 35.7
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 2.9e-16 89.4 147 36.1
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 5.4e-15 85.1 114 43.9
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 9.2e-15 84.3 94 54.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 3.5e-14 82.4 198 33.8
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.5e-12 76.3 167 31.7
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 3.4e-09 65.9 188 29.8
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 9.8e-09 64.3 162 30.9
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 2.2e-08 63.2 168 30.4
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 8.3e-08 61.2 71 50.7
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 1.6e-06 57.0 185 30.3


User provided reference genes

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