Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.4e-145 519.6 266 100.0
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 5.3e-137 491.1 283 91.2
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 8.5e-111 404.1 296 73.6
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.2e-110 402.1 286 77.3
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 6.1e-109 397.9 249 80.7
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 3.0e-108 395.6 249 80.3
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.7e-106 388.7 286 74.8
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.5e-104 381.7 285 74.7
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.5e-104 381.7 285 74.7
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 3.3e-102 375.6 250 73.2
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.6e-102 374.8 234 78.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.2e-99 367.1 250 74.8
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.5e-99 366.7 289 65.4
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.5e-99 366.7 250 72.0
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.3e-98 363.6 286 67.1
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.3e-98 363.6 283 67.5
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.9e-98 362.5 284 65.1
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.9e-98 362.5 226 77.0
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.9e-98 361.7 284 64.8
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.4e-97 360.1 278 65.8
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.8e-97 359.8 246 72.0
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.8e-97 359.8 221 79.2
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 2.4e-97 359.4 238 72.3
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 4.1e-97 358.6 252 70.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 2.0e-96 356.3 247 72.1
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.0e-96 356.3 227 77.5
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.0e-96 356.3 261 65.9
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 2.7e-96 355.9 269 66.5
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.3e-95 353.6 287 65.5
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.3e-95 353.6 282 64.2
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 3.9e-95 352.1 284 64.4
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 5.0e-95 351.7 287 65.2
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.5e-94 350.1 229 73.4
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.5e-94 349.4 246 68.7
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.3e-94 349.0 248 70.2
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 3.3e-94 349.0 221 76.5
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 4.3e-94 348.6 251 70.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 5.6e-94 348.2 282 63.1
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 9.5e-94 347.4 289 61.2
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.2e-93 347.1 284 64.8
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.2e-93 347.1 264 68.6
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.1e-93 346.3 286 62.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 4.7e-93 345.1 238 72.7
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.1e-92 344.0 230 73.0
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.4e-92 343.6 229 72.5
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.8e-92 343.2 287 61.7
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.0e-92 342.0 247 70.4
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 5.2e-92 341.7 288 61.5
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 6.8e-92 341.3 220 73.2
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.5e-91 340.1 256 68.4
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 2.0e-91 339.7 284 63.0
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.6e-91 339.3 220 74.1
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.4e-91 338.6 283 60.8
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 4.4e-91 338.6 239 69.5
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 5.8e-91 338.2 264 65.5
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.5e-91 337.8 255 64.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 7.5e-91 337.8 284 62.7
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 4.9e-90 335.1 292 59.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 6.4e-90 334.7 230 72.2
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 8.3e-90 334.3 231 70.6
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.1e-89 334.0 254 64.2
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.2e-89 332.4 260 65.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 5.4e-89 331.6 234 68.8
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 2.0e-88 329.7 283 60.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 2.0e-88 329.7 288 61.5
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 2.7e-88 329.3 283 59.4
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.6e-88 328.6 204 77.0
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.0e-87 327.4 282 60.6
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.0e-87 327.4 247 66.8
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.3e-87 326.2 278 64.0
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.3e-87 326.2 230 67.8
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 5.0e-87 325.1 238 65.5
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 8.6e-87 324.3 227 69.6
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.5e-86 323.6 283 60.1
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 7.3e-86 321.2 240 64.6
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 9.5e-86 320.9 282 61.0
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.2e-85 320.5 230 67.0
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.1e-85 319.7 288 58.3
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 3.6e-85 318.9 221 69.2
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 8.1e-85 317.8 276 59.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.4e-84 317.0 286 59.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.4e-84 317.0 292 57.9
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 3.1e-84 315.8 230 68.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 8.9e-84 314.3 229 67.2
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 8.9e-84 314.3 243 64.6
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 2.0e-83 313.2 291 57.7
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 2.6e-83 312.8 291 57.7
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.7e-82 310.1 229 66.8
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.7e-82 310.1 284 59.5
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 2.9e-82 309.3 289 56.7
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 6.4e-82 308.1 231 67.1
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 4.1e-81 305.4 287 59.6
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.2e-80 303.9 245 64.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.2e-80 303.9 245 60.4
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 5.2e-76 288.5 182 78.6
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.5e-75 287.0 227 63.0
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 3.8e-74 282.3 201 68.2
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 3.8e-74 282.3 253 56.5
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 4.9e-74 282.0 201 66.2
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.2e-72 277.3 238 56.3
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.7e-71 273.5 196 67.9
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 4.3e-70 268.9 183 72.7
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.8e-68 263.5 183 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 9.0e-68 261.2 242 54.5
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 9.0e-68 261.2 243 53.5
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.2e-67 260.8 221 57.5
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 7.6e-67 258.1 272 51.8
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.7e-66 256.9 272 51.8
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.4e-65 253.8 174 71.8
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.5e-64 249.2 239 59.4
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 7.8e-64 248.1 227 53.3
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.8e-60 236.9 179 65.9
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 5.8e-59 231.9 163 69.9
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.7e-58 230.3 275 52.0
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 6.9e-52 208.4 193 56.5
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.7e-50 203.8 127 73.2
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.9e-50 203.0 230 49.1
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.7e-48 196.4 134 67.9
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.6e-40 170.6 308 35.4
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.8e-39 167.2 265 37.0
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 9.7e-38 161.4 116 71.6
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.4e-36 156.8 286 35.7
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 8.5e-34 148.3 121 62.0
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.5e-33 145.6 77 90.9
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 3.6e-32 142.9 113 67.3
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.8e-31 140.6 86 82.6
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 6.7e-31 138.7 130 57.7
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.1e-28 131.3 72 80.6
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.7e-24 116.7 96 56.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 2.6e-22 110.2 76 67.1
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 4.1e-20 102.8 78 65.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.4e-19 99.8 223 29.6
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.7e-13 80.9 56 60.7
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 2.4e-12 77.0 74 51.4


User provided reference genes

Program Settings