Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002650 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D113323 2.9e-60 235.0 112 100.0
Actinidia27918 Actinidia chinensis HOM05D000663 ORTHO05D003046 7.0e-14 80.9 47 80.9
Cfa004965 Carpinus fangiana HOM05D000663 ORTHO05D003046 7.0e-14 80.9 47 78.7
Haze_02437 Corylus avellana HOM05D000663 ORTHO05D003046 7.0e-14 80.9 47 78.7
Dinv23569 Davidia involucrata HOM05D000663 ORTHO05D003046 7.0e-14 80.9 47 78.7
MD10G1084900 Malus domestica HOM05D000663 ORTHO05D003046 7.0e-14 80.9 47 78.7
TAR381G1418 Trochodendron aralioides HOM05D000663 ORTHO05D003046 9.1e-14 80.5 47 74.5
vmacro19446 Vaccinium macrocarpon HOM05D000663 ORTHO05D003046 9.1e-14 80.5 47 80.9
vmacro23388 Vaccinium macrocarpon HOM05D000663 ORTHO05D003046 9.1e-14 80.5 47 80.9
Prupe.8G107800 Prunus persica HOM05D000663 ORTHO05D003046 1.2e-13 80.1 47 76.6
Rhsim05G0078000 Rhododendron simsii HOM05D000663 ORTHO05D003046 1.2e-13 80.1 47 78.7
Dinv42101 Davidia involucrata HOM05D000663 ORTHO05D003046 1.6e-13 79.7 47 76.6
Glyma.12G047000 Glycine max HOM05D000663 ORTHO05D003046 1.6e-13 79.7 47 78.7
Medtr4g068780 Medicago truncatula HOM05D000663 ORTHO05D003046 1.6e-13 79.7 47 78.7
QL11p039606 Quercus lobata HOM05D000663 ORTHO05D003046 1.6e-13 79.7 47 76.6
GSVIVG01031895001 Vitis vinifera HOM05D000663 ORTHO05D003046 1.6e-13 79.7 47 76.6
arahy.Tifrunner.gnm1.ann1.L8FFLZ Arachis hypogaea HOM05D000663 ORTHO05D003046 2.0e-13 79.3 47 76.6
arahy.Tifrunner.gnm1.ann1.R6Y0SS Arachis hypogaea HOM05D000663 ORTHO05D003046 2.0e-13 79.3 47 76.6
Glyma.11G122200 Glycine max HOM05D000663 ORTHO05D003046 2.0e-13 79.3 40 90.0
Atru.chr5.2908 Acer truncatum HOM05D000663 ORTHO05D003046 2.7e-13 79.0 47 74.5
Ciclev10029477m.g Citrus clementina HOM05D000663 ORTHO05D003046 2.7e-13 79.0 47 72.3
FAN15G1372 Fragaria x ananassa HOM05D000663 ORTHO05D003046 2.7e-13 79.0 40 87.5
FAN20G0225 Fragaria x ananassa HOM05D000663 ORTHO05D003046 2.7e-13 79.0 40 87.5
FAN24G1147 Fragaria x ananassa HOM05D000025 ORTHO05D000040 2.7e-13 79.0 40 87.5
RcHm_v2.0_Chr6g0262031 Rosa chinensis HOM05D000663 ORTHO05D003046 2.7e-13 79.0 40 87.5
COL.COLO4_17789 Corchorus olitorius HOM05D000663 ORTHO05D003046 3.5e-13 78.6 47 76.6
Duzib132G0384 Durio zibethinus HOM05D000663 ORTHO05D003046 3.5e-13 78.6 47 76.6
Thecc.02G030200 Theobroma cacao HOM05D000663 ORTHO05D003046 3.5e-13 78.6 47 76.6
VMungo1127G0178 Vigna mungo HOM05D000663 ORTHO05D003046 3.5e-13 78.6 47 76.6
ClCG09G017920 Citrullus lanatus HOM05D000663 ORTHO05D003046 4.5e-13 78.2 47 76.6
MELO3C021960.2 Cucumis melo HOM05D000663 ORTHO05D003046 4.5e-13 78.2 47 76.6
CsaV3_2G014530 Cucumis sativus L. HOM05D000663 ORTHO05D003046 4.5e-13 78.2 47 76.6
PGR042G1246 Punica granatum HOM05D000663 ORTHO05D003046 4.5e-13 78.2 47 74.5
Hma1.2p1_0584F.1_g183360 Hydrangea macrophylla HOM05D000663 ORTHO05D003046 5.9e-13 77.8 46 73.9
Manes.17G097800 Manihot esculenta HOM05D000663 ORTHO05D003046 5.9e-13 77.8 47 74.5
Lalb_Chr01g0002881 Lupinus albus HOM05D000663 ORTHO05D003046 7.7e-13 77.4 40 87.5
Lj5A203G55 Lonicera japonica HOM05D000663 ORTHO05D003046 1.0e-12 77.0 48 75.0
Lj3g0009223 Lotus japonicus HOM05D000663 ORTHO05D003046 1.0e-12 77.0 47 72.3
Nn5g29448 Nelumbo nucifera HOM05D000663 ORTHO05D003046 1.0e-12 77.0 47 70.2
Phvul.011G049100 Phaseolus vulgaris HOM05D000663 ORTHO05D003046 1.0e-12 77.0 47 74.5
CiPaw.06G138600 Carya illinoinensis HOM05D000663 ORTHO05D003046 1.3e-12 76.6 47 74.5
Potri.004G149332 Populus trichocarpa HOM05D000663 ORTHO05D003046 1.3e-12 76.6 47 72.3
TWI79G1154 Tripterygium wilfordii HOM05D000663 ORTHO05D003046 1.3e-12 76.6 47 72.3
Sed0019769 Sechium edule HOM05D000663 ORTHO05D003046 1.7e-12 76.3 47 72.3
Potri.009G110200 Populus trichocarpa HOM05D000663 ORTHO05D003046 2.2e-12 75.9 40 82.5
Sabra09G0084200 Salix brachista HOM05D000663 ORTHO05D003046 2.2e-12 75.9 40 82.5
FvH4_2g07710 Fragaria vesca HOM05D000663 ORTHO05D003046 2.9e-12 75.5 40 85.0
CiPaw.05G059600 Carya illinoinensis HOM05D000663 ORTHO05D003046 5.0e-12 74.7 47 72.3
TPR.G29892 Trifolium pratense HOM05D000663 ORTHO05D003046 5.0e-12 74.7 38 92.1
TAR628G0318 Trochodendron aralioides HOM05D000663 ORTHO05D003046 1.1e-11 73.6 47 63.8
Lsat_1_v5_gn_7_88660 Lactuca sativa HOM05D000663 ORTHO05D003046 2.5e-11 72.4 61 57.4
Cc02_g18080 Coffea canephora HOM05D000663 ORTHO05D003046 3.2e-11 72.0 47 66.0
Peaxi162Scf00684g00560 Petunia axillaris HOM05D000663 ORTHO05D003046 3.2e-11 72.0 64 54.7
Gohir.D01G172400 Gossypium hirsutum HOM05D000663 ORTHO05D003046 9.4e-11 70.5 47 66.0
Gorai.002G214000 Gossypium raimondii HOM05D000663 ORTHO05D003046 9.4e-11 70.5 47 66.0
MBI16_g13166_MAGBIO Magnolia biondii HOM05D000663 ORTHO05D003046 1.6e-10 69.7 47 63.8
Sc03g0001120 Simmondsia chinensis HOM05D000663 ORTHO05D003046 1.6e-10 69.7 47 63.8
GSVIVG01003767001 Vitis vinifera HOM05D000663 ORTHO05D003046 1.6e-10 69.7 47 63.8
Eucgr.I01232 Eucalyptus grandis HOM05D000663 ORTHO05D003046 2.1e-10 69.3 38 81.6
Nn6g32179 Nelumbo nucifera HOM05D000663 ORTHO05D003046 2.1e-10 69.3 47 63.8
Gohir.A01G181300 Gossypium hirsutum HOM05D000663 ORTHO05D003046 3.6e-10 68.6 47 63.8
Manes.15G146600 Manihot esculenta HOM05D000663 ORTHO05D003046 3.6e-10 68.6 47 66.0
PSO700G0388 Papaver somniferum HOM05D000663 ORTHO05D003046 3.6e-10 68.6 47 59.6
Peaxi162Scf00016g01134 Petunia axillaris HOM05D000663 ORTHO05D003046 4.7e-10 68.2 39 76.9
Aqoxy5G01739 Aquilegia oxysepala HOM05D000663 ORTHO05D003046 6.1e-10 67.8 47 68.1
Nitab4.5_0003281g0030 Nicotiana tabacum HOM05D000663 ORTHO05D003046 8.0e-10 67.4 39 74.4
PSO541G5941 Papaver somniferum HOM05D000663 ORTHO05D003046 8.0e-10 67.4 40 67.5
Oeu034078.2 Olea europaea HOM05D000663 ORTHO05D003046 1.4e-09 66.6 64 51.6
Dinv26781 Davidia involucrata HOM05D000663 ORTHO05D003046 1.8e-09 66.2 47 63.8
Os03g0767900 Oryza sativa ssp. japonica HOM05D000663 ORTHO05D003046 1.8e-09 66.2 47 57.4
EL10Ac6g14854 Beta vulgaris HOM05D000663 ORTHO05D003046 2.3e-09 65.9 40 70.0
AUR62027246 Chenopodium quinoa HOM05D000663 ORTHO05D003046 3.0e-09 65.5 40 67.5
HanXRQChr16g0506131 Helianthus annuus HOM05D000663 ORTHO05D003046 3.0e-09 65.5 40 75.0
ECA236G3327 Erigeron canadensis HOM05D000663 ORTHO05D000001 4.0e-09 65.1 40 70.0
Hund00295 Selenicereus undatus HOM05D000663 ORTHO05D003046 4.0e-09 65.1 47 59.6
Hund00302 Selenicereus undatus HOM05D000663 ORTHO05D003046 4.0e-09 65.1 47 59.6
Sc16g0001230 Simmondsia chinensis HOM05D000663 ORTHO05D003046 4.0e-09 65.1 47 59.6
AUR62003228 Chenopodium quinoa HOM05D000663 ORTHO05D003046 5.2e-09 64.7 40 67.5
PSO170G2038 Papaver somniferum HOM05D000663 ORTHO05D003046 6.8e-09 64.3 47 55.3
Cc07_g05340 Coffea canephora HOM05D000663 ORTHO05D003046 8.8e-09 63.9 47 61.7
DCAR_029003 Daucus carota HOM05D000663 ORTHO05D003046 8.8e-09 63.9 49 61.2
Actinidia30990 Actinidia chinensis HOM05D000663 ORTHO05D003046 1.5e-08 63.2 47 59.6
Duzib187G0410 Durio zibethinus HOM05D000663 ORTHO05D003046 1.5e-08 63.2 39 69.2
Thecc.01G045200 Theobroma cacao HOM05D000663 ORTHO05D003046 1.5e-08 63.2 39 69.2
Oeu028949.2 Olea europaea HOM05D000663 ORTHO05D003046 2.0e-08 62.8 47 61.7
SalBow1G5966 Salvia bowleyana HOM05D000663 ORTHO05D003046 2.0e-08 62.8 47 59.6
vmacro17877 Vaccinium macrocarpon HOM05D000663 ORTHO05D003046 2.0e-08 62.8 47 59.6
MSTRG.5384 Avicennia marina HOM05D000663 ORTHO05D003046 2.6e-08 62.4 47 59.6
CANSAT01G1081 Cannabis sativa HOM05D000663 ORTHO05D003046 2.6e-08 62.4 39 64.1
Gohir.D10G094100 Gossypium hirsutum HOM05D000663 ORTHO05D003046 2.6e-08 62.4 39 66.7
Gorai.011G103200 Gossypium raimondii HOM05D000663 ORTHO05D003046 3.4e-08 62.0 40 65.0
PSO675G7740 Papaver somniferum HOM05D000663 ORTHO05D003046 3.4e-08 62.0 47 55.3
PSO675G8220 Papaver somniferum HOM05D000663 ORTHO05D003046 3.4e-08 62.0 47 55.3
QL06p044322 Quercus lobata HOM05D000663 ORTHO05D003046 3.4e-08 62.0 38 71.1
Rhsim08G0109900 Rhododendron simsii HOM05D000663 ORTHO05D043708 3.4e-08 62.0 46 60.9
Hund14122 Selenicereus undatus HOM05D000663 ORTHO05D003046 3.4e-08 62.0 38 68.4
Actinidia19141 Actinidia chinensis HOM05D000663 ORTHO05D003046 4.4e-08 61.6 47 57.4
Haze_15160 Corylus avellana HOM05D000663 ORTHO05D003046 4.4e-08 61.6 95 38.9
Gohir.A11G188000 Gossypium hirsutum HOM05D000663 ORTHO05D003046 5.7e-08 61.2 39 71.8
Gohir.D06G092600 Gossypium hirsutum HOM05D000663 ORTHO05D003046 5.7e-08 61.2 39 71.8
Gohir.D11G194500 Gossypium hirsutum HOM05D000663 ORTHO05D003046 5.7e-08 61.2 39 71.8
Gorai.007G207900 Gossypium raimondii HOM05D000663 ORTHO05D003046 5.7e-08 61.2 39 71.8
COL.COLO4_22172 Corchorus olitorius HOM05D000663 ORTHO05D003046 7.5e-08 60.8 39 71.8
Gohir.A10G094000 Gossypium hirsutum HOM05D000663 ORTHO05D003046 7.5e-08 60.8 39 64.1
Duzib264G0513 Durio zibethinus HOM05D000663 ORTHO05D003046 9.8e-08 60.5 39 69.2
Nitab4.5_0000108g0120 Nicotiana tabacum HOM05D000663 ORTHO05D003046 9.8e-08 60.5 47 57.4
Nitab4.5_0003580g0060 Nicotiana tabacum HOM05D000663 ORTHO05D003046 9.8e-08 60.5 47 57.4
DCAR_025666 Daucus carota HOM05D000663 ORTHO05D003046 1.7e-07 59.7 47 57.4
Manes.12G097100 Manihot esculenta HOM05D000663 ORTHO05D003046 1.7e-07 59.7 47 53.2
CDE01G0293 Ceratophyllum demersum HOM05D000663 ORTHO05D003046 2.2e-07 59.3 47 53.2
Gorai.009G408600 Gossypium raimondii HOM05D000663 ORTHO05D003046 2.2e-07 59.3 39 69.2
Zm00001eb058720 Zea mays HOM05D000663 ORTHO05D003046 2.2e-07 59.3 47 59.6
CDE02G1378 Ceratophyllum demersum HOM05D000663 ORTHO05D003046 2.8e-07 58.9 47 53.2
Gohir.D05G346200 Gossypium hirsutum HOM05D000663 ORTHO05D003046 2.8e-07 58.9 48 58.3
Oeu032912.1 Olea europaea HOM05D000663 ORTHO05D003046 2.8e-07 58.9 47 53.2
Manes.13G132800 Manihot esculenta HOM05D000663 ORTHO05D003046 3.7e-07 58.5 39 69.2
CSS0019577 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 4.8e-07 58.2 47 55.3
CSS0019667 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 4.8e-07 58.2 47 55.3
Migut.H00508 Erythranthe guttata HOM05D000663 ORTHO05D003046 4.8e-07 58.2 47 55.3
Ciclev10026699m.g Citrus clementina HOM05D000663 ORTHO05D003046 6.3e-07 57.8 47 53.2
MSTRG.2925 Avicennia marina HOM05D000663 ORTHO05D003046 8.3e-07 57.4 47 57.4
CiPaw.01G029800 Carya illinoinensis HOM05D000663 ORTHO05D003046 8.3e-07 57.4 38 60.5
Prupe.7G146000 Prunus persica HOM05D000663 ORTHO05D003046 8.3e-07 57.4 38 60.5
RcHm_v2.0_Chr2g0103141 Rosa chinensis HOM05D000663 ORTHO05D003046 8.3e-07 57.4 38 60.5
Solyc02g090000.3 Solanum lycopersicum HOM05D000663 ORTHO05D003046 8.3e-07 57.4 40 62.5
Sopen02g034690 Solanum pennellii HOM05D000663 ORTHO05D003046 8.3e-07 57.4 40 62.5
Gorai.010G106900 Gossypium raimondii HOM05D000663 ORTHO05D003046 1.1e-06 57.0 39 69.2
PGSC0003DMG400010037 Solanum tuberosum HOM05D000663 ORTHO05D003046 1.1e-06 57.0 40 60.0
SGA_v2.0_scaffold55G19815 Striga asiatica HOM05D000663 ORTHO05D003046 1.1e-06 57.0 47 51.1
Lsat_1_v5_gn_3_93761 Lactuca sativa HOM05D000663 ORTHO05D003046 1.4e-06 56.6 57 49.1
SalBow3G0198 Salvia bowleyana HOM05D000663 ORTHO05D003046 1.4e-06 56.6 38 60.5
Lj7C14G9 Lonicera japonica HOM05D000663 ORTHO05D003046 2.4e-06 55.8 47 53.2
SGA_v2.0_scaffold15G07194 Striga asiatica HOM05D000663 ORTHO05D003046 2.4e-06 55.8 39 64.1
Hund16567 Selenicereus undatus HOM05D000663 ORTHO05D003046 3.1e-06 55.5 61 47.5
TWI09G0825 Tripterygium wilfordii HOM05D000663 ORTHO05D003046 3.1e-06 55.5 38 71.1
HanXRQChr12g0378441 Helianthus annuus HOM05D000663 ORTHO05D003046 4.1e-06 55.1 46 54.3
Solyc02g065420.3 Solanum lycopersicum HOM05D000663 ORTHO05D003046 5.4e-06 54.7 48 52.1
Sopen02g015620 Solanum pennellii HOM05D000663 ORTHO05D003046 5.4e-06 54.7 48 52.1


User provided reference genes

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