Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 8.4e-246 853.2 420 100.0
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.0e-243 844.7 420 99.0
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 8.8e-219 763.5 420 88.6
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.8e-217 758.4 420 87.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 7.2e-213 743.8 420 85.5
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 5.2e-211 737.6 420 85.5
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 9.4e-205 716.8 420 81.7
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.6e-196 689.5 420 78.3
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.1e-196 689.1 420 79.5
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 3.4e-194 681.8 420 77.1
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 7.5e-194 680.6 420 77.6
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.7e-193 679.5 420 77.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.1e-192 676.8 420 76.2
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 4.1e-192 674.9 420 77.9
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 78.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 77.4
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.0e-191 672.5 420 77.1
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 2.7e-191 672.2 420 76.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.2e-190 669.1 420 77.1
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.2e-190 669.1 420 75.5
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.1e-189 666.8 420 76.4
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.1e-189 666.8 420 76.4
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-189 666.4 420 76.2
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.9e-189 666.0 420 76.2
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.9e-189 666.0 420 76.2
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 4.7e-188 661.4 420 76.9
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 8.0e-188 660.6 420 75.7
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.3e-187 659.1 420 76.4
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 4.0e-187 658.3 420 75.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 5.2e-187 657.9 420 74.5
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.2e-186 656.8 420 75.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.4e-186 654.8 420 76.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 5.7e-186 654.4 420 75.0
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 7.5e-186 654.1 419 75.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.8e-185 652.1 420 74.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 3.7e-185 651.7 420 74.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.7e-185 651.7 420 74.8
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.9e-185 651.4 420 76.0
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.3e-185 650.6 420 75.7
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 8.3e-185 650.6 420 75.5
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.4e-184 649.0 421 73.9
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.4e-184 647.9 421 73.6
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 72.9
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.0e-183 646.0 420 74.3
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.5e-183 645.2 420 74.0
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 7.8e-183 644.0 420 74.0
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.7e-182 642.9 420 73.8
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.7e-182 642.9 420 73.1
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.0e-182 641.3 420 73.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 5.0e-182 641.3 410 75.9
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 6.6e-182 641.0 420 74.8
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-181 639.8 420 73.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 2.5e-181 639.0 405 75.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 4.3e-181 638.3 407 75.4
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.6e-181 637.9 420 72.9
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.2e-180 636.7 420 71.7
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.6e-180 636.3 420 72.4
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 73.1
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 4.0e-179 631.7 421 72.9
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 8.9e-179 630.6 425 71.5
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 4.4e-178 628.2 420 71.9
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 7.5e-178 627.5 420 71.2
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.3e-177 626.7 425 71.3
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.9e-177 625.5 420 72.6
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.9e-177 625.5 420 71.7
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.1e-176 623.6 420 70.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.2e-176 622.1 423 70.9
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 7.0e-176 620.9 419 70.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 9.2e-176 620.5 425 71.3
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 9.2e-176 620.5 417 72.2
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 9.2e-176 620.5 423 72.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.0e-175 619.4 420 71.7
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.7e-174 616.3 420 70.2
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.3e-174 615.9 425 70.6
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.3e-174 615.9 421 72.4
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.9e-174 615.1 420 71.4
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 5.0e-174 614.8 421 71.3
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.5e-173 613.2 420 69.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 2.5e-173 612.5 420 69.5
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 9.5e-173 610.5 420 69.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 2.1e-172 609.4 420 68.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.7e-172 608.2 421 69.8
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.2e-170 603.6 424 70.0
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.5e-170 603.2 421 69.8
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.7e-169 599.7 421 70.8
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 66.4
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 9.2e-168 594.0 421 68.4
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 3.9e-166 588.6 422 66.8
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 6.6e-166 587.8 420 69.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.9e-165 586.3 420 68.3
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.3e-165 585.5 420 67.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.8e-163 579.7 377 72.7
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 5.8e-162 574.7 422 69.7
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 65.5
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 5.4e-160 568.2 420 65.7
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 3.5e-159 565.5 420 65.5
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 6.0e-159 564.7 421 68.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 65.2
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 2.3e-158 562.8 421 68.4
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.5e-157 560.1 420 64.8
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.5e-157 560.1 420 64.8
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.5e-157 559.3 421 67.5
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 3.3e-157 558.9 420 64.5
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 63.8
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 5.6e-157 558.1 420 64.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 7.3e-157 557.8 420 64.3
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 9.5e-157 557.4 421 62.5
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 7.6e-154 547.7 420 62.4
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 9.9e-154 547.4 420 62.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.1e-152 543.9 420 62.6
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.5e-149 533.5 426 62.2
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.1e-148 529.6 421 59.6
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.3e-141 505.8 421 57.7
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.9e-137 492.7 357 70.6
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.2e-128 462.2 405 54.3
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 4.6e-127 458.8 425 53.6
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.0e-126 457.6 251 86.9
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 3.1e-123 446.0 425 53.2
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 4.6e-119 432.2 419 51.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 7.9e-119 431.4 325 64.6
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 2.9e-113 412.9 282 70.9
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.8e-110 403.7 422 49.8
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.8e-99 367.1 302 62.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 6.5e-97 358.6 412 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.8e-94 350.5 374 46.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.1e-88 331.3 248 62.9
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.9e-88 330.5 300 53.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 4.8e-76 289.3 317 45.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.0e-65 252.7 266 53.4
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.7e-60 237.7 134 80.6
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 4.4e-53 213.0 132 78.8
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.1e-43 181.8 155 58.1
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.8e-39 167.2 99 80.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-35 153.3 91 80.2
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-29 134.0 74 83.8
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-29 132.9 71 85.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.9e-27 127.9 71 84.5
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-26 124.0 71 83.1
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-26 124.0 71 83.1
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.6e-23 114.8 104 55.8
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.4e-22 111.7 102 58.8
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 6.7e-09 66.2 243 27.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-08 65.5 238 25.6
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-08 65.5 238 26.5
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-08 64.3 238 25.6
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-08 64.3 238 25.6
CBR_g46671 Chara braunii HOM05D014545 ORTHO05D020397 4.8e-07 60.1 321 24.3
Nitab4.5_0002580g0040 Nicotiana tabacum HOM05D005268 ORTHO05D000493 6.2e-07 59.7 235 28.1
Rhsim08G0230500 Rhododendron simsii HOM05D001477 ORTHO05D001182 6.2e-07 59.7 272 23.5
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 8.2e-07 59.3 210 24.8
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 8.2e-07 59.3 241 25.7
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 8.2e-07 59.3 275 24.7
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 1.1e-06 58.9 76 47.4
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 1.8e-06 58.2 302 25.2
CsaV3_3G044070 Cucumis sativus L. HOM05D001477 ORTHO05D001182 4.0e-06 57.0 220 23.6
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 4.0e-06 57.0 229 26.2
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 5.3e-06 56.6 234 28.6
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 5.3e-06 56.6 275 24.4


User provided reference genes

Program Settings