Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 9.3e-86 320.9 259 100.0
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 1.4e-73 280.4 180 86.1
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.5e-70 269.6 181 83.4
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 6.0e-69 265.0 183 84.2
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.3e-68 263.1 184 85.3
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.8e-66 256.1 155 87.7
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 3.7e-66 255.8 155 88.4
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 6.2e-66 255.0 167 85.0
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 1.4e-65 253.8 182 82.4
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 3.1e-65 252.7 145 92.4
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 9.0e-65 251.1 158 84.2
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 9.0e-65 251.1 182 78.6
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.0e-64 250.0 189 76.7
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-64 249.2 181 81.2
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 3.4e-64 249.2 181 83.4
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 5.8e-64 248.4 183 80.9
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.0e-63 247.7 181 80.7
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.0e-63 247.7 183 78.7
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.3e-63 247.3 181 82.3
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 3.8e-63 245.7 182 80.8
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 4.9e-63 245.4 149 87.9
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 6.5e-63 245.0 155 83.9
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 6.5e-63 245.0 160 84.4
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 6.5e-63 245.0 160 83.1
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 8.4e-63 244.6 182 73.6
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.4e-62 243.8 157 84.7
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.9e-62 243.4 147 88.4
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.5e-62 243.0 182 74.7
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 3.2e-62 242.7 182 82.4
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 4.2e-62 242.3 155 84.5
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 5.5e-62 241.9 182 77.5
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 9.3e-62 241.1 158 82.9
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.2e-61 240.7 182 79.7
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 1.2e-61 240.7 185 73.0
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 4.6e-61 238.8 183 80.9
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 4.6e-61 238.8 183 79.8
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 6.0e-61 238.4 182 75.3
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 7.9e-61 238.0 181 79.6
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.3e-60 237.3 183 74.9
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 1.8e-60 236.9 180 80.0
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 1.8e-60 236.9 180 79.4
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 2.3e-60 236.5 155 82.6
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 3.9e-60 235.7 156 82.1
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 5.1e-60 235.3 182 75.8
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 8.7e-60 234.6 150 83.3
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.3e-59 232.6 148 85.1
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 3.3e-59 232.6 150 82.0
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 3.3e-59 232.6 152 82.9
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 5.7e-59 231.9 155 80.6
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 5.7e-59 231.9 175 74.9
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 7.4e-59 231.5 158 79.1
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 9.7e-59 231.1 182 80.8
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.3e-58 230.7 159 81.1
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 1.6e-58 230.3 185 74.6
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.6e-58 230.3 184 74.5
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 2.2e-58 229.9 158 78.5
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 3.7e-58 229.2 150 80.7
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 3.7e-58 229.2 182 79.1
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 3.7e-58 229.2 150 84.0
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 6.3e-58 228.4 146 82.9
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 8.2e-58 228.0 154 81.8
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 8.2e-58 228.0 154 81.8
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.1e-57 227.6 155 80.0
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 1.4e-57 227.3 150 84.7
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 1.4e-57 227.3 153 83.0
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.8e-57 226.9 182 78.0
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.4e-57 226.5 150 82.0
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 3.1e-57 226.1 158 77.8
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.1e-57 226.1 154 81.2
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 4.1e-57 225.7 184 73.4
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 4.1e-57 225.7 183 71.6
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 6.9e-57 224.9 185 71.4
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 6.9e-57 224.9 147 85.7
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.0e-56 223.4 160 78.1
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 2.0e-56 223.4 160 80.0
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.6e-56 223.0 185 71.4
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 2.6e-56 223.0 158 77.8
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 2.6e-56 223.0 152 81.6
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.6e-56 223.0 146 83.6
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.6e-56 223.0 160 79.4
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.9e-56 221.9 153 79.7
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.9e-56 221.9 153 79.7
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 7.7e-56 221.5 183 72.7
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.3e-55 220.7 184 71.2
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.3e-55 220.7 148 81.1
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 150 80.0
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 1.7e-55 220.3 183 76.5
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.2e-55 219.9 146 84.9
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 2.2e-55 219.9 146 81.5
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 5.0e-55 218.8 144 81.9
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 6.5e-55 218.4 146 82.2
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 6.5e-55 218.4 146 80.8
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 8.5e-55 218.0 143 82.5
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 2.5e-54 216.5 144 81.9
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 3.2e-54 216.1 152 80.9
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.5e-54 215.3 139 84.9
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.6e-53 213.8 135 85.2
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 3.6e-53 212.6 134 85.1
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 3.6e-53 212.6 152 78.3
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 3.6e-53 212.6 152 78.3
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 6.1e-53 211.8 155 77.4
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.4e-52 210.7 134 82.8
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 8.8e-52 208.0 134 83.6
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.1e-51 207.6 171 73.1
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.5e-51 207.2 133 84.2
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.0e-51 206.8 167 73.1
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.0e-51 206.8 167 73.1
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 2.5e-51 206.5 149 77.9
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 2.5e-51 206.5 149 77.9
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 2.5e-51 206.5 149 77.9
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 2.5e-51 206.5 168 73.8
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 3.3e-51 206.1 170 72.4
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 1.3e-50 204.1 149 79.2
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.3e-50 204.1 149 77.9
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 1.3e-50 204.1 149 77.2
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 1.3e-50 204.1 149 77.2
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 2.8e-50 203.0 148 77.7
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 2.8e-50 203.0 169 70.4
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 2.8e-50 203.0 148 77.7
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 2.8e-50 203.0 148 77.7
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 6.3e-50 201.8 145 78.6
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.1e-49 201.1 131 84.7
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.4e-49 200.7 191 64.9
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.4e-49 200.7 140 76.4
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.5e-48 197.2 140 75.0
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.0e-48 196.8 138 79.0
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 5.9e-48 195.3 137 79.6
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.9e-47 193.0 164 70.1
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 1.4e-46 190.7 136 75.7
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.9e-46 190.3 145 76.6
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.4e-44 184.1 161 68.9
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.5e-43 180.6 136 73.5
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 5.7e-43 178.7 170 66.5
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 9.7e-43 177.9 115 85.2
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.1e-41 174.5 159 62.9
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 5.9e-40 168.7 189 61.4
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.3e-39 167.5 138 67.4
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.3e-36 156.8 121 75.2
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 4.8e-34 149.1 135 66.7
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 7.0e-33 145.2 109 70.6
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 9.4e-30 134.8 121 62.8
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 2.7e-29 133.3 102 72.5
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 3.6e-29 132.9 181 56.4
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.4e-28 131.0 93 83.9
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.7e-26 122.9 114 64.9
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 2.4e-25 120.2 148 53.4
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 4.1e-25 119.4 145 51.7
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 5.3e-25 119.0 82 69.5
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.9e-22 110.5 143 53.8
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 6.8e-20 102.1 72 81.9
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 6.8e-20 102.1 72 81.9
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.3e-18 97.8 84 70.2
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.8e-18 96.7 73 75.3
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 5.0e-15 85.9 67 85.1
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.2e-13 81.3 65 80.0
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 3.4e-11 73.2 47 76.6
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 5.0e-07 59.3 60 46.7


User provided reference genes

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