Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002620 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 4.1e-33 144.1 68 100.0
CSS0005224 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 1.2e-32 142.5 68 98.5
CSS0014690 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 5.9e-32 140.2 68 97.1
CSS0047603 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D016147 8.5e-31 136.3 68 95.6
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.6e-24 114.8 59 91.5
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.5e-24 114.0 59 91.5
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 7.7e-24 113.2 59 91.5
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 7.7e-24 113.2 59 91.5
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 1.0e-23 112.8 59 89.8
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 1.7e-23 112.1 59 89.8
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 2.2e-23 111.7 59 89.8
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.2e-23 111.7 59 89.8
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 88.1
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 3.8e-23 110.9 59 89.8
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 88.1
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 88.1
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 86.4
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 5.0e-23 110.5 59 88.1
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 6.5e-23 110.2 59 88.1
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 6.5e-23 110.2 59 86.4
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 6.5e-23 110.2 59 86.4
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 6.5e-23 110.2 59 88.1
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 8.5e-23 109.8 59 88.1
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 8.5e-23 109.8 59 88.1
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 88.1
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.1e-22 109.4 59 86.4
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 86.4
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 88.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 86.4
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 86.4
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 84.7
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.5e-22 109.0 59 84.7
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 1.9e-22 108.6 60 85.0
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.9e-22 108.6 59 84.7
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 86.4
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 84.7
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 2.5e-22 108.2 59 84.7
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.2e-22 107.8 57 89.5
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 84.7
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 86.4
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 3.2e-22 107.8 59 84.7
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 4.2e-22 107.5 59 86.4
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 4.2e-22 107.5 55 90.9
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 84.7
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 84.7
arahy.Tifrunner.gnm1.ann1.UC42H8 Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 84.7
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 86.4
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 5.5e-22 107.1 59 84.7
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 7.2e-22 106.7 59 84.7
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 7.2e-22 106.7 59 84.7
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 7.2e-22 106.7 59 84.7
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 7.2e-22 106.7 59 84.7
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 9.4e-22 106.3 59 83.1
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 9.4e-22 106.3 59 84.7
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.2e-21 105.9 59 84.7
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-21 105.9 59 84.7
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.2e-21 105.9 59 84.7
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.2e-21 105.9 59 84.7
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.6e-21 105.5 59 84.7
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 1.6e-21 105.5 59 84.7
Cpa.g.sc520.2 Carica papaya HOM05D002370 ORTHO05D003878 3.6e-21 104.4 58 84.5
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 3.6e-21 104.4 59 81.4
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 4.7e-21 104.0 59 78.0
CANSAT25G3449 Cannabis sativa HOM05D002370 ORTHO05D016147 6.1e-21 103.6 59 83.1
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 6.1e-21 103.6 59 83.1
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 8.0e-21 103.2 59 83.1
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 81.4
SEGI_17280 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.4e-20 102.4 59 79.7
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 81.4
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 81.4
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.8e-20 102.1 59 81.4
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 2.3e-20 101.7 59 81.4
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 3.0e-20 101.3 55 87.3
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.0e-20 101.3 59 79.7
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 3.0e-20 101.3 59 83.1
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 4.0e-20 100.9 59 79.7
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 5.2e-20 100.5 59 79.7
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 5.2e-20 100.5 59 78.0
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 5.2e-20 100.5 59 79.7
TPR.G8287 Trifolium pratense HOM05D002370 ORTHO05D003878 5.2e-20 100.5 59 78.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 6.8e-20 100.1 59 79.7
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 6.8e-20 100.1 59 74.6
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 6.8e-20 100.1 55 85.5
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 6.8e-20 100.1 59 78.0
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 8.8e-20 99.8 57 80.7
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 8.8e-20 99.8 59 78.0
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.8e-20 99.8 59 78.0
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 1.5e-19 99.0 59 78.0
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 2.0e-19 98.6 59 76.3
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 2.0e-19 98.6 59 78.0
Lsat_1_v5_gn_3_135700 Lactuca sativa HOM05D002370 ORTHO05D016147 3.4e-19 97.8 56 80.4
Lsat_1_v5_gn_4_79581 Lactuca sativa HOM05D002370 ORTHO05D016147 3.4e-19 97.8 60 75.0
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 3.4e-19 97.8 59 76.3
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 4.4e-19 97.4 59 76.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 9.7e-19 96.3 59 76.3
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.3e-18 95.9 59 74.6
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 1.3e-18 95.9 59 74.6
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.3e-18 95.9 59 74.6
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.3e-18 95.9 59 74.6
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 1.3e-18 95.9 59 74.6
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 1.3e-18 95.9 59 74.6
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 4.8e-18 94.0 59 72.9
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 6.3e-18 93.6 59 71.2
CANSAT56G3908 Cannabis sativa HOM05D002370 ORTHO05D003878 1.4e-17 92.4 51 86.3
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.4e-17 91.7 59 71.2
EL10Ac5g12235 Beta vulgaris HOM05D002370 ORTHO05D003878 9.1e-17 89.7 52 76.9
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 9.1e-17 89.7 60 70.0
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 5.9e-16 87.0 60 65.0
Nn1g06850 Nelumbo nucifera HOM05D000013 ORTHO05D279905 1.2e-11 72.8 69 55.1
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 4.8e-10 67.4 60 53.3
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 9.1e-09 63.2 59 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 4.5e-08 60.8 60 46.7
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 4.5e-08 60.8 58 46.6


User provided reference genes

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