Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 0.0e+00 1166.0 587 100.0
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 0.0e+00 1164.1 587 99.8
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 2.3e-305 1051.6 583 90.2
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 2.5e-296 1021.5 566 89.2
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 3.2e-291 1004.6 686 76.4
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 4.3e-288 994.2 553 88.6
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 9.5e-288 993.0 571 85.3
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 8.0e-287 989.9 583 83.7
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 1.3e-284 982.6 566 86.2
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 2.9e-284 981.5 553 87.0
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 3.7e-284 981.1 569 85.4
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 6.4e-284 980.3 582 83.7
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 5.4e-283 977.2 567 85.2
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 5.4e-283 977.2 583 83.4
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 7.1e-283 976.9 606 81.5
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 1.2e-282 976.1 545 88.1
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 2.3e-281 971.8 550 86.4
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 5.1e-281 970.7 557 85.5
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 8.6e-281 969.9 563 84.5
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.5e-280 969.1 546 86.8
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.5e-280 968.4 546 86.8
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.3e-280 968.0 550 86.2
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.2e-279 966.1 583 82.3
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 2.1e-279 965.3 568 83.8
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 2.8e-279 964.9 568 83.1
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 4.7e-279 964.1 548 86.1
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 1.4e-278 962.6 546 86.1
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.0e-278 961.1 546 85.3
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.5e-277 959.1 546 85.9
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 3.4e-277 958.0 563 84.2
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 7.6e-277 956.8 557 84.6
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 9.9e-277 956.4 547 84.6
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 1.7e-276 955.7 559 83.4
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 2.2e-276 955.3 583 81.1
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 1.9e-275 952.2 582 84.0
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 5.4e-275 950.7 583 80.8
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 9.2e-275 949.9 547 85.2
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 3.5e-274 948.0 571 82.1
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 6.0e-274 947.2 572 81.8
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 6.0e-274 947.2 557 83.3
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 1.0e-273 946.4 557 83.7
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 2.3e-273 945.3 547 85.9
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 3.0e-273 944.9 525 87.8
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 6.6e-273 943.7 583 81.0
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 6.6e-273 943.7 525 87.2
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 3.3e-272 941.4 547 83.7
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 4.3e-272 941.0 522 87.9
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 5.6e-272 940.6 521 87.7
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 4.7e-271 937.6 522 87.7
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 8.1e-271 936.8 571 80.2
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.1e-270 936.4 547 84.1
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.4e-270 936.0 573 79.1
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.5e-269 932.6 508 89.8
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 5.8e-269 930.6 548 81.6
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 2.9e-268 928.3 541 82.6
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 3.8e-268 927.9 540 82.4
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 3.8e-268 927.9 535 84.1
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 1.4e-267 926.0 550 82.2
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 1.9e-267 925.6 548 81.9
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 1.9e-267 925.6 550 82.2
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 3.2e-267 924.9 544 82.9
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.2e-267 924.9 550 82.2
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 4.2e-267 924.5 548 82.1
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 3.5e-266 921.4 552 80.4
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.5e-266 921.4 559 81.8
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 7.8e-266 920.2 521 86.8
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 7.8e-266 920.2 551 81.5
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 3.9e-265 917.9 547 80.3
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 5.1e-265 917.5 549 80.0
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 5.1e-265 917.5 577 79.0
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 1.1e-264 916.4 547 80.1
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 1.5e-264 916.0 550 80.2
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 1.5e-264 916.0 549 80.1
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 1.9e-264 915.6 565 78.9
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 2.5e-264 915.2 584 77.7
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 1.3e-263 912.9 547 79.3
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 2.8e-263 911.8 552 79.5
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 8.1e-263 910.2 547 79.7
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 8.1e-263 910.2 547 79.7
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 8.1e-263 910.2 547 78.8
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 1.8e-262 909.1 552 79.2
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 4.0e-262 907.9 547 79.7
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 6.9e-262 907.1 547 79.7
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 2.0e-261 905.6 521 84.6
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 3.4e-261 904.8 547 79.5
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 2.9e-260 901.7 521 84.1
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.4e-259 898.7 597 74.5
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.3e-257 892.9 544 79.2
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 8.7e-257 890.2 546 80.0
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.9e-256 889.0 552 79.2
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 1.1e-254 883.2 540 78.7
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 4.3e-248 861.3 547 76.4
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 5.6e-248 860.9 542 77.5
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 1.6e-247 859.4 545 78.3
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 1.4e-243 846.3 498 84.1
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 2.7e-242 842.0 469 86.8
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 3.0e-241 838.6 468 87.2
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 7.4e-240 833.9 495 83.4
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 1.1e-238 830.1 542 74.5
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 2.4e-238 828.9 557 72.7
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.1e-238 828.2 521 79.3
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 3.8e-236 821.6 439 91.6
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 2.8e-231 805.4 544 72.1
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.4e-230 802.4 468 81.0
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 5.0e-228 794.7 443 88.3
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.7e-223 778.5 466 81.5
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 2.7e-218 762.3 544 69.9
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 3.0e-209 732.3 587 69.0
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 2.0e-205 719.5 542 66.6
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 6.5e-196 688.0 544 62.7
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 1.3e-191 673.7 464 72.6
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 1.4e-169 600.5 556 54.9
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 1.3e-167 594.0 527 57.9
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 2.1e-157 560.1 450 60.9
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.6e-154 550.4 520 54.8
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 1.4e-142 510.8 332 75.9
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.4e-134 484.2 279 85.3
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 6.1e-85 319.3 254 61.0
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 2.7e-80 303.9 158 92.4
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 2.1e-53 214.5 502 30.5
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 1.6e-45 188.3 208 51.0
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 2.4e-33 147.9 90 81.1
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.9e-30 138.3 443 26.2
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.0e-23 115.9 81 70.4
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 4.3e-22 110.5 65 78.5
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 6.4e-18 96.7 76 61.8
QL11p035429 Quercus lobata HOM05D006107 ORTHO05D007455 2.7e-08 64.7 47 68.1
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 7.9e-08 63.2 30 93.3
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 3.0e-07 61.2 437 21.1


User provided reference genes

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