Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.7e-131 470.7 240 100.0
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.5e-98 360.9 185 97.3
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.1e-96 355.1 244 74.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-93 346.7 178 97.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.6e-93 344.7 247 74.9
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.1e-92 342.8 242 74.0
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.2e-89 332.8 248 71.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.6e-84 315.5 245 68.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 8.0e-84 314.3 242 67.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.0e-82 309.7 240 65.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.9e-81 305.1 179 82.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 8.3e-81 304.3 246 64.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-80 303.1 163 93.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.9e-80 303.1 240 68.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.4e-80 301.6 247 66.4
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 9.2e-80 300.8 246 63.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-79 299.7 243 65.0
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.0e-79 299.7 246 63.8
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.7e-79 299.3 243 64.6
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.0e-79 298.1 248 64.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.8e-79 297.7 240 64.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.0e-78 297.4 242 63.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.7e-78 296.6 244 63.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.3e-78 296.2 246 63.0
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.9e-78 295.4 240 63.3
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 3.9e-78 295.4 240 62.9
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.0e-78 295.0 245 65.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.6e-78 294.7 251 61.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 6.6e-78 294.7 244 61.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.9e-77 293.1 243 64.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.9e-77 293.1 244 63.1
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.9e-77 293.1 244 63.5
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.5e-77 292.7 244 62.7
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.3e-77 292.0 240 60.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.2e-76 290.4 243 63.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.2e-76 290.4 243 63.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.8e-76 289.3 243 62.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.7e-76 288.5 247 60.3
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-75 287.3 147 98.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.1e-75 287.3 170 81.2
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.8e-75 284.6 241 59.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.8e-75 284.6 241 59.8
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-74 283.9 180 78.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.4e-74 282.3 180 77.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.4e-74 282.0 239 62.8
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.4e-74 282.0 180 77.2
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 7.5e-74 281.2 238 60.1
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.8e-74 280.8 245 60.0
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.7e-73 280.0 238 61.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 2.2e-73 279.6 243 58.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.9e-73 279.3 186 70.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.9e-73 279.3 240 62.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.7e-73 278.9 243 61.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.7e-73 278.9 244 61.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.9e-73 278.5 239 61.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 4.9e-73 278.5 241 62.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.1e-72 277.3 238 57.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.4e-72 276.9 237 60.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.4e-72 276.9 240 60.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.2e-72 275.8 186 72.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.2e-72 275.8 245 58.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 5.4e-72 275.0 240 58.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 9.2e-72 274.2 233 62.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.2e-71 273.9 186 68.8
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.6e-71 273.5 237 59.9
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.7e-71 272.7 249 59.8
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.7e-71 272.7 245 58.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-71 272.3 244 58.2
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.5e-71 272.3 245 60.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 4.6e-71 271.9 244 59.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 4.6e-71 271.9 244 59.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.6e-71 271.9 245 59.6
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 7.8e-71 271.2 241 61.4
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 7.8e-71 271.2 240 57.9
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.3e-70 270.4 244 60.2
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.3e-70 270.4 247 56.7
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.3e-70 270.4 244 59.8
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-70 270.0 164 86.6
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.3e-70 269.6 240 57.9
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.0e-70 269.2 248 58.5
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.0e-70 269.2 248 58.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.1e-70 268.5 242 58.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 5.1e-70 268.5 251 57.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.6e-70 268.1 244 57.4
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 6.6e-70 268.1 257 57.6
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.9e-69 266.5 242 57.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.9e-69 266.5 245 59.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-69 266.2 242 58.3
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 4.3e-69 265.4 191 68.1
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 4.3e-69 265.4 191 68.1
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 4.3e-69 265.4 252 56.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 4.3e-69 265.4 249 55.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.3e-69 264.6 246 58.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 7.3e-69 264.6 252 56.3
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.3e-69 264.6 246 58.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.3e-69 264.6 246 58.5
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.2e-68 263.8 237 59.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.8e-68 262.7 192 66.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 3.6e-68 262.3 176 72.7
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.7e-68 261.9 240 57.9
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.2e-68 261.5 178 70.8
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.1e-67 260.8 181 71.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.1e-67 260.8 255 54.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-67 260.4 243 58.0
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.4e-67 260.4 248 54.4
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.8e-67 260.0 228 61.0
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.8e-67 260.0 241 59.3
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 3.1e-67 259.2 241 56.8
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.1e-67 259.2 243 57.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.0e-67 258.8 244 57.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.2e-67 258.5 238 56.3
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.2e-67 258.5 178 69.1
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.6e-66 256.1 162 77.2
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 4.4e-66 255.4 245 57.6
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.2e-65 253.1 237 56.1
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-65 252.7 227 62.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.8e-65 252.3 178 67.4
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 3.8e-65 252.3 180 69.4
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.9e-65 251.9 132 93.9
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 6.4e-65 251.5 175 68.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.4e-65 251.5 243 56.8
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 8.4e-65 251.1 242 57.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.4e-64 250.4 227 58.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.4e-64 250.4 240 55.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.2e-63 247.3 175 66.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-62 243.8 150 79.3
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.9e-61 240.0 172 68.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.3e-61 239.2 172 68.0
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.1e-60 236.5 227 55.9
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 6.2e-60 235.0 235 54.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.8e-59 233.4 172 65.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 4.0e-59 232.3 244 52.5
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-58 230.3 147 84.4
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 9.9e-58 227.6 223 59.2
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.3e-57 227.3 171 64.3
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 4.9e-57 225.3 219 56.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.1e-56 221.5 207 56.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 9.3e-56 221.1 173 61.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.2e-55 220.7 181 59.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.1e-53 214.2 181 58.0
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.1e-51 207.6 230 50.9
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.2e-49 199.9 162 63.6
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.3e-43 178.7 112 75.0
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.8e-36 156.4 172 44.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.1e-35 154.5 106 67.0
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.6e-34 148.3 76 92.1
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.2e-31 141.0 105 72.4
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.1e-31 140.2 203 36.5
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 3.0e-30 136.3 150 49.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 8.7e-30 134.8 175 38.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.8e-28 129.8 169 41.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.1e-27 125.9 160 41.9
CSS0039315 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D112399 1.0e-22 111.3 62 95.2
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.0e-18 97.1 86 55.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.8e-17 92.8 150 35.3
CSS0046883 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D109365 8.5e-17 91.7 59 81.4
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-15 87.8 100 43.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.8e-06 57.4 71 42.3
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.8e-06 57.4 71 42.3
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 5.2e-06 55.8 63 46.0


User provided reference genes

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