Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 1.8e-77 293.1 231 100.0
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 2.1e-28 130.2 149 68.5
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 3.3e-26 122.9 144 68.1
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 2.8e-25 119.8 156 64.7
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 3.7e-25 119.4 145 68.3
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 5.8e-23 112.1 144 65.3
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 1.7e-22 110.5 135 67.4
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.7e-22 110.5 116 75.0
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 2.9e-22 109.8 135 67.4
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 3.8e-22 109.4 152 60.5
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 6.4e-22 108.6 128 69.5
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 1.1e-21 107.8 117 71.8
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 1.9e-21 107.1 158 60.8
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.9e-21 107.1 125 69.6
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 4.2e-21 105.9 154 61.7
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 7.1e-21 105.1 143 65.0
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 7.1e-21 105.1 135 66.7
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 2.1e-20 103.6 149 65.1
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 2.7e-20 103.2 115 73.9
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 2.7e-20 103.2 115 73.0
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 7.9e-20 101.7 152 63.2
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 7.9e-20 101.7 97 52.6
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 1.0e-19 101.3 96 52.1
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.8e-19 100.5 96 51.0
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 1.9e-18 97.1 81 56.8
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 5.6e-18 95.5 73 54.8
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 7.4e-18 95.1 136 57.4
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 1.3e-17 94.4 148 60.8
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 8.2e-17 91.7 62 61.3
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.1e-16 91.3 148 60.8
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.1e-16 89.7 148 60.8
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 5.3e-16 89.0 74 56.8
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 6.9e-16 88.6 98 45.9
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 6.9e-16 88.6 120 65.8
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 1.2e-15 87.8 81 48.1
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 3.4e-15 86.3 86 46.5
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 3.4e-15 86.3 102 46.1
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 1.0e-14 84.7 102 45.1
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 1.7e-14 84.0 67 49.3
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 3.8e-14 82.8 101 42.6
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 6.5e-14 82.0 96 44.8
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 6.5e-14 82.0 80 45.0
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 1.1e-13 81.3 104 38.5
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 1.4e-13 80.9 116 65.5
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 1.9e-13 80.5 107 40.2
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 3.2e-13 79.7 112 67.9
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 4.2e-13 79.3 153 57.5
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 5.5e-13 79.0 66 53.0
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 7.1e-13 78.6 99 41.4
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-11 74.3 98 39.8
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.8e-11 73.9 93 39.8
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 3.0e-11 73.2 102 38.2
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 5.1e-11 72.4 96 41.7
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 5.1e-11 72.4 61 50.8
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 8.7e-11 71.6 93 44.1
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 8.7e-11 71.6 104 35.6
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 1.9e-10 70.5 94 40.4
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 2.5e-10 70.1 48 54.2
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 1.6e-09 67.4 94 40.4
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-09 67.4 96 39.6
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-09 67.4 96 39.6
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-09 67.4 96 39.6
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.6e-09 67.4 61 52.5
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 1.6e-09 67.4 45 60.0
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 6.3e-09 65.5 101 38.6
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 6.3e-09 65.5 70 44.3
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-08 64.7 78 41.0
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 1.4e-08 64.3 48 56.2
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 5.3e-08 62.4 48 52.1
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 6.9e-08 62.0 99 40.4
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 9.0e-08 61.6 47 51.1
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.5e-07 60.8 98 35.7
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 3.4e-07 59.7 51 47.1
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 3.4e-07 59.7 96 36.5
AL1G58320 Arabidopsis lyrata HOM05D012777 ORTHO05D009905 8.5e-06 55.1 71 39.4


User provided reference genes

Program Settings