Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 0.0e+00 1337.4 718 100.0
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 0.0e+00 1128.2 616 98.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.1e-216 757.3 776 59.8
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 7.7e-207 724.5 765 59.9
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.6e-190 667.9 737 58.6
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.1e-188 663.3 731 56.5
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.8e-161 572.8 638 57.7
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.9e-149 533.9 744 50.1
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.9e-133 480.7 763 46.4
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.9e-131 472.2 782 44.0
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 6.9e-123 445.7 730 45.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.3e-118 430.6 759 44.0
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.3e-118 430.6 713 44.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 3.3e-117 426.8 749 43.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.3e-116 424.9 703 43.8
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 2.2e-116 424.1 748 44.0
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.9e-113 413.7 724 44.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 8.5e-113 412.1 743 41.9
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 3.6e-111 406.8 720 43.2
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.4e-110 404.8 715 44.2
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.7e-110 402.5 739 42.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.0e-109 401.0 751 42.6
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 4.8e-108 396.4 726 43.5
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 6.3e-108 396.0 761 41.4
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.3e-108 396.0 761 41.4
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.2e-106 391.7 742 42.2
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.9e-106 389.4 742 41.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.7e-105 387.9 714 41.7
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.7e-105 387.9 742 40.6
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 3.8e-105 386.7 721 43.3
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 4.2e-104 383.3 710 41.3
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.1e-103 379.4 742 40.3
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.0e-102 378.6 799 38.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 5.7e-101 372.9 727 41.8
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.7e-100 370.2 758 39.3
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.1e-99 368.6 760 40.8
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 3.1e-99 367.1 728 41.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.0e-98 364.4 682 42.5
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 7.7e-98 362.5 540 46.1
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.7e-97 361.3 721 40.2
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.9e-96 357.8 722 41.4
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 4.2e-96 356.7 737 40.4
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 4.2e-96 356.7 674 42.0
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.7e-95 354.0 698 41.7
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 3.6e-95 353.6 718 40.5
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 7.5e-93 345.9 724 39.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 8.2e-92 342.4 744 37.4
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 3.1e-91 340.5 723 39.6
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 5.3e-91 339.7 669 40.7
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 9.1e-91 339.0 701 38.8
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.7e-90 337.4 506 46.6
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 6.5e-89 332.8 714 39.5
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.5e-88 331.6 730 38.8
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 9.4e-88 328.9 693 41.1
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.2e-87 328.6 723 39.1
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 4.7e-87 326.6 697 39.3
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.0e-86 323.6 640 40.9
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 8.3e-84 315.8 724 37.0
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 7.0e-83 312.8 699 37.8
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 5.0e-81 306.6 221 71.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 8.6e-81 305.8 556 42.4
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.5e-80 305.1 639 39.1
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.6e-79 301.6 624 39.4
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 2.8e-79 300.8 711 35.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.0e-78 298.9 724 36.6
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.3e-78 297.7 708 35.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 4.0e-78 297.0 620 36.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 2.6e-77 294.3 744 36.0
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 2.2e-76 291.2 723 36.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 2.8e-76 290.8 693 37.4
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 8.3e-76 289.3 799 35.5
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.1e-75 287.3 578 40.1
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 3.1e-75 287.3 432 45.6
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 3.1e-75 287.3 722 34.9
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 4.1e-75 287.0 726 35.5
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 3.8e-73 280.4 825 33.0
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.5e-72 278.5 695 36.1
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.9e-72 278.1 801 33.3
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 7.3e-72 276.2 607 39.0
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 4.7e-71 273.5 729 35.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.4e-70 271.9 738 35.2
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 5.2e-70 270.0 700 35.0
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.5e-69 268.5 717 35.3
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.4e-69 267.3 706 34.3
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.7e-68 265.0 806 33.5
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 2.9e-68 264.2 758 33.9
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 3.7e-68 263.8 705 35.5
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.1e-67 262.3 741 34.0
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.1e-67 262.3 738 33.6
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.7e-66 257.7 700 35.6
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.3e-65 255.4 800 33.4
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 2.3e-65 254.6 734 33.5
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 8.6e-65 252.7 707 34.4
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 8.6e-65 252.7 521 38.0
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 2.5e-64 251.1 704 35.2
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.3e-64 250.8 730 33.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 6.2e-63 246.5 749 32.8
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.4e-62 245.4 709 34.7
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.4e-62 245.4 704 34.1
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.1e-62 244.2 545 37.8
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 4.0e-62 243.8 569 37.8
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 5.2e-62 243.4 704 33.9
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.2e-61 242.3 216 61.6
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 2.9e-60 237.7 711 34.2
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.5e-56 222.6 412 44.9
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-55 221.9 364 48.4
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 4.7e-55 220.3 705 32.3
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 2.9e-52 211.1 697 32.0
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 5.4e-51 206.8 739 31.7
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.3e-49 201.4 534 34.5
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.2e-46 190.3 339 38.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 4.1e-43 180.6 649 31.6
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.5e-42 177.6 696 29.9
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.5e-42 177.6 640 31.9
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 9.6e-40 169.5 422 39.1
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 4.0e-38 164.1 530 32.1
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 6.0e-34 150.2 668 28.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 8.7e-33 146.4 515 30.5
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.1e-32 146.0 619 27.6
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-31 142.1 230 46.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 2.2e-28 131.7 100 66.0
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-27 128.6 131 59.5
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.6e-23 115.5 116 61.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 8.1e-23 113.2 168 46.4
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 8.4e-20 103.2 91 58.2
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 4.8e-15 87.4 105 49.5
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 8.2e-15 86.7 143 48.3
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.6e-13 81.6 90 51.1
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 7.6e-13 80.1 65 60.0
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 2.2e-12 78.6 106 41.5
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.1e-08 66.2 81 45.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.3e-07 62.8 45 60.0
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 4.8e-07 60.8 45 57.8
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 8.2e-07 60.1 45 64.4
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.4e-06 58.5 46 65.2
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 2.4e-06 58.5 61 44.3
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 2.4e-06 58.5 66 50.0
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 9.0e-06 56.6 32 75.0


User provided reference genes

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