Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.3e-172 607.1 294 100.0
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.2e-93 345.1 304 63.2
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.1e-85 319.3 304 61.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 8.6e-80 301.2 291 59.8
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 2.5e-79 299.7 312 57.1
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 4.0e-77 292.4 305 54.8
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.2e-77 292.0 301 55.5
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 7.6e-76 288.1 297 54.9
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 4.1e-74 282.3 297 53.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.4e-74 282.0 297 53.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.1e-73 280.0 305 53.4
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.1e-73 280.0 305 50.8
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.8e-73 278.1 288 54.9
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 3.9e-72 275.8 305 53.1
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.1e-72 275.4 305 53.1
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 6.6e-72 275.0 305 50.5
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.6e-72 275.0 282 53.9
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 3.3e-71 272.7 305 52.5
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.3e-71 272.3 305 51.8
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 9.6e-71 271.2 305 50.8
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.2e-70 270.8 305 51.8
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.1e-70 270.0 305 52.1
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.4e-69 266.5 305 49.5
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.4e-69 266.5 305 51.1
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.4e-69 266.5 312 49.7
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.4e-69 266.5 306 51.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 4.0e-69 265.8 306 51.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.0e-69 265.8 305 50.8
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.0e-69 265.8 305 50.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 5.2e-69 265.4 304 50.0
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 5.2e-69 265.4 304 51.0
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 5.2e-69 265.4 305 50.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.9e-69 265.0 265 52.5
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 6.9e-69 265.0 305 51.8
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.0e-68 263.5 306 50.3
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.0e-68 263.5 304 50.3
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.4e-68 262.7 305 50.5
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 5.8e-68 261.9 304 50.3
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.3e-67 260.8 302 51.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.3e-67 260.8 305 48.2
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 2.9e-67 259.6 306 50.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 3.8e-67 259.2 304 50.7
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.9e-67 258.8 304 49.7
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 6.4e-67 258.5 306 49.3
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 6.4e-67 258.5 306 47.7
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.4e-66 257.3 312 49.0
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.4e-66 257.3 287 52.3
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.2e-66 255.8 305 50.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.3e-66 254.6 309 48.5
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.2e-65 254.2 200 65.5
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.6e-65 253.8 309 49.8
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-65 253.4 283 50.5
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 2.7e-65 253.1 305 47.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 3.5e-65 252.7 307 50.2
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 6.0e-65 251.9 306 48.0
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 7.8e-65 251.5 282 50.0
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 7.8e-65 251.5 305 47.2
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-64 251.1 281 50.2
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.0e-64 251.1 304 47.4
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.0e-64 251.1 304 49.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.7e-64 250.4 309 49.5
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.3e-64 250.0 304 50.0
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.0e-64 249.6 306 47.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.0e-64 249.6 204 65.7
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 5.1e-64 248.8 304 48.4
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.5e-63 247.3 305 47.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.9e-63 246.9 304 48.4
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.9e-63 246.9 302 48.7
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.9e-63 246.9 301 46.2
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.5e-63 246.5 200 63.0
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.3e-63 246.1 282 48.9
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 5.6e-63 245.4 306 48.4
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 9.6e-63 244.6 302 48.7
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.3e-62 244.2 306 48.0
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.6e-62 243.8 301 46.2
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.6e-62 243.8 302 48.3
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 2.1e-62 243.4 305 47.5
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.1e-62 243.4 306 48.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.1e-62 243.4 310 48.7
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.8e-62 243.0 301 48.5
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 4.8e-62 242.3 356 44.4
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 6.2e-62 241.9 359 43.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 6.2e-62 241.9 306 47.1
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 8.1e-62 241.5 301 47.8
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.1e-61 241.1 305 47.2
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.8e-61 240.4 306 46.4
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.8e-61 240.4 309 46.0
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 3.1e-61 239.6 305 47.5
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.1e-61 239.6 307 46.9
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.0e-61 239.2 283 50.2
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 5.3e-61 238.8 301 44.9
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 5.3e-61 238.8 300 46.3
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.3e-61 238.8 305 46.6
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 6.9e-61 238.4 321 44.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 9.0e-61 238.0 308 46.8
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 9.0e-61 238.0 305 45.9
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-60 237.7 300 45.3
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.2e-60 237.7 300 45.3
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.2e-60 237.7 301 44.9
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.2e-60 237.7 303 46.5
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.5e-60 237.3 301 45.2
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.5e-60 237.3 306 46.4
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.5e-60 237.3 282 48.2
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.5e-60 237.3 300 45.3
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.0e-60 236.9 303 45.5
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 2.6e-60 236.5 307 49.2
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 3.4e-60 236.1 308 45.1
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.5e-60 235.7 301 44.5
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-60 235.7 300 46.0
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-60 235.7 301 44.5
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.5e-60 235.7 301 44.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.5e-60 235.7 305 45.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 7.6e-60 235.0 308 48.4
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 7.6e-60 235.0 307 45.9
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.9e-60 234.6 331 44.7
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.3e-59 234.2 305 44.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.7e-59 233.8 300 45.3
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 4.9e-59 232.3 327 44.0
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 8.4e-59 231.5 303 45.2
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 3.2e-58 229.6 162 71.0
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 4.2e-58 229.2 310 45.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 4.2e-58 229.2 303 47.5
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.4e-58 228.8 310 45.5
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 3.5e-57 226.1 307 45.6
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 4.6e-57 225.7 306 45.4
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 6.7e-56 221.9 313 45.0
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 8.7e-56 221.5 294 46.3
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.5e-55 219.9 304 43.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 2.5e-55 219.9 305 43.9
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.3e-55 219.2 303 44.2
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 3.6e-54 216.1 171 66.1
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.1e-53 214.5 169 66.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.8e-53 213.8 203 59.1
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.6e-52 209.9 177 61.6
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.4e-52 209.5 201 57.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.5e-52 209.1 298 45.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 3.8e-51 206.1 321 39.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 4.9e-51 205.7 170 62.9
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.0e-49 198.7 171 59.6
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.5e-47 193.4 201 55.2
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.8e-46 189.1 304 41.4
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.8e-45 187.2 306 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 2.4e-45 186.8 304 39.5
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.5e-44 184.1 310 41.6
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 2.6e-44 183.3 285 43.2
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 6.0e-41 172.2 136 64.7
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.1e-34 151.4 172 45.3
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.5e-31 140.2 130 57.7
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 9.7e-31 138.3 189 42.9
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.7e-27 127.5 124 53.2
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 6.5e-27 125.6 95 66.3
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 9.4e-26 121.7 178 41.6
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.9e-18 97.4 66 72.7
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 7.2e-18 95.5 49 83.7
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 9.4e-18 95.1 72 63.9
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 3.9e-16 89.7 49 79.6
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.7e-14 84.3 84 53.6
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 4.1e-13 79.7 41 87.8
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 6.7e-08 62.4 47 66.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.0e-07 60.8 73 43.8
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 2.6e-07 60.5 35 80.0
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.6e-07 60.5 80 50.0
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.4e-07 59.7 69 49.3
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.7e-06 56.6 77 46.8
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 8.2e-06 55.5 37 67.6


User provided reference genes

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