Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002585 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.3e-51 205.3 106 100.0
MSTRG.1610 Avicennia marina HOM05D000086 ORTHO05D002912 1.1e-19 100.1 93 60.2
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.4e-19 99.8 97 62.9
Nitab4.5_0007335g0030 Nicotiana tabacum HOM05D000086 ORTHO05D002912 4.0e-19 98.2 92 62.0
PGSC0003DMG400033135 Solanum tuberosum HOM05D000086 ORTHO05D002912 4.4e-18 94.7 107 54.2
Actinidia29365 Actinidia chinensis HOM05D000086 ORTHO05D002912 9.8e-18 93.6 107 57.9
Duzib116G0004 Durio zibethinus HOM05D000086 ORTHO05D002912 9.8e-18 93.6 81 63.0
Solyc06g064440.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 1.3e-17 93.2 107 53.3
Ciclev10021842m.g Citrus clementina HOM05D000086 ORTHO05D002912 1.7e-17 92.8 102 53.9
Peaxi162Scf00818g00319 Petunia axillaris HOM05D000086 ORTHO05D002912 1.7e-17 92.8 112 51.8
GSVIVG01037142001 Vitis vinifera HOM05D000086 ORTHO05D002912 2.2e-17 92.4 107 57.0
Cpa.g.sc142.5 Carica papaya HOM05D000086 ORTHO05D002912 2.9e-17 92.0 87 60.9
Phvul.011G215400 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 3.7e-17 91.7 94 54.3
Aqoxy5G01852 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 4.9e-17 91.3 101 55.4
Lalb_Chr19g0131911 Lupinus albus HOM05D000086 ORTHO05D002912 1.1e-16 90.1 107 50.5
Gohir.A03G080900 Gossypium hirsutum HOM05D000086 ORTHO05D002912 1.4e-16 89.7 107 54.2
Oeu020628.1 Olea europaea HOM05D000086 ORTHO05D002912 1.4e-16 89.7 96 59.4
Manes.18G109000 Manihot esculenta HOM05D000086 ORTHO05D002912 1.9e-16 89.4 108 56.5
arahy.Tifrunner.gnm1.ann1.UV0H6R Arachis hypogaea HOM05D000086 ORTHO05D002912 3.2e-16 88.6 90 58.9
Potri.013G095100 Populus trichocarpa HOM05D000086 ORTHO05D002912 3.2e-16 88.6 91 60.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 3.2e-16 88.6 109 51.4
Atru.chr13.2582 Acer truncatum HOM05D000086 ORTHO05D002912 4.1e-16 88.2 105 54.3
arahy.Tifrunner.gnm1.ann1.WURL8V Arachis hypogaea HOM05D000086 ORTHO05D002912 4.1e-16 88.2 90 58.9
TWI12G1094 Tripterygium wilfordii HOM05D000086 ORTHO05D002912 1.2e-15 86.7 106 50.9
Medtr4g030070 Medicago truncatula HOM05D000086 ORTHO05D002912 1.6e-15 86.3 106 50.9
Lj9A695T55 Lonicera japonica HOM05D000086 ORTHO05D002912 2.1e-15 85.9 88 55.7
Nn5g27230 Nelumbo nucifera HOM05D000086 ORTHO05D002912 2.1e-15 85.9 104 53.8
Sabra13G0081100 Salix brachista HOM05D000086 ORTHO05D002912 2.1e-15 85.9 96 57.3
QL09p001255 Quercus lobata HOM05D000086 ORTHO05D002912 2.7e-15 85.5 105 47.6
DCAR_001172 Daucus carota HOM05D000086 ORTHO05D002912 4.6e-15 84.7 111 50.5
DCAR_010109 Daucus carota HOM05D000086 ORTHO05D002912 4.6e-15 84.7 111 50.5
Nitab4.5_0001489g0050 Nicotiana tabacum HOM05D000086 ORTHO05D002912 4.6e-15 84.7 111 53.2
Manes.02G200348 Manihot esculenta HOM05D000086 ORTHO05D002912 7.8e-15 84.0 115 48.7
Psat7g229760 Pisum sativum HOM05D000086 ORTHO05D002912 7.8e-15 84.0 90 53.3
VMungo1127G1869 Vigna mungo HOM05D000086 ORTHO05D002912 1.0e-14 83.6 91 53.8
Lj3g0023405 Lotus japonicus HOM05D000086 ORTHO05D002912 1.3e-14 83.2 120 50.0
TAR628G0190 Trochodendron aralioides HOM05D000086 ORTHO05D002912 1.3e-14 83.2 102 52.9
Carub.0001s3167 Capsella rubella HOM05D000086 ORTHO05D002912 2.3e-14 82.4 104 52.9
Hma1.2p1_0016F.1_g010970 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 3.0e-14 82.0 107 52.3
RcHm_v2.0_Chr6g0249581 Rosa chinensis HOM05D000086 ORTHO05D002912 3.0e-14 82.0 85 55.3
CARHR032920 Cardamine hirsuta HOM05D000086 ORTHO05D002912 3.9e-14 81.6 103 50.5
Os02g0557300 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D002912 3.9e-14 81.6 90 50.0
Zm00001eb243920 Zea mays HOM05D000086 ORTHO05D002912 3.9e-14 81.6 90 51.1
MBI06_g32151_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 5.1e-14 81.3 89 55.1
Prupe.8G002900 Prunus persica HOM05D000086 ORTHO05D002912 5.1e-14 81.3 107 49.5
Thhalv10009296m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 6.6e-14 80.9 103 51.5
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 8.6e-14 80.5 82 56.1
Glyma.09G001600 Glycine max HOM05D000086 ORTHO05D002912 8.6e-14 80.5 90 54.4
AT1G33480 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 1.5e-13 79.7 103 52.4
Cc10_g16100 Coffea canephora HOM05D000086 ORTHO05D002912 1.5e-13 79.7 88 55.7
Migut.C01400 Erythranthe guttata HOM05D000086 ORTHO05D002912 1.5e-13 79.7 91 59.3
A09p32790 Brassica napus HOM05D000086 ORTHO05D002912 5.6e-13 77.8 103 49.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.6e-13 77.8 89 55.1
BraA09t38814Z Brassica rapa HOM05D000086 ORTHO05D002912 9.5e-13 77.0 103 47.6
Aa31LG6G7950 Aethionema arabicum HOM05D000086 ORTHO05D002912 1.2e-12 76.6 86 52.3
BcaC08g43850 Brassica carinata HOM05D000086 ORTHO05D002912 1.2e-12 76.6 103 48.5
C06p12330 Brassica napus HOM05D000086 ORTHO05D002912 1.2e-12 76.6 103 48.5
BolC6t36384H Brassica oleracea HOM05D000086 ORTHO05D002912 1.2e-12 76.6 103 48.5
PSO210G5455 Papaver somniferum HOM05D000086 ORTHO05D002912 1.2e-12 76.6 107 49.5
TPR.G4399 Trifolium pratense HOM05D000086 ORTHO05D002912 2.1e-12 75.9 114 47.4
SGA_v2.0_scaffold118G32639 Striga asiatica HOM05D002546 ORTHO05D002671 2.8e-12 75.5 112 49.1
Eucgr.F04086 Eucalyptus grandis HOM05D000086 ORTHO05D002912 3.6e-12 75.1 95 49.5
Gohir.D02G103700 Gossypium hirsutum HOM05D000086 ORTHO05D002912 3.6e-12 75.1 107 53.3
AL6G43980 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 4.7e-12 74.7 101 44.6
FAN19G2136 Fragaria x ananassa HOM05D000086 ORTHO05D002912 6.2e-12 74.3 92 46.7
MELO3C022123.2 Cucumis melo HOM05D000086 ORTHO05D002912 1.4e-11 73.2 89 49.4
THA.LOC104813084 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 1.4e-11 73.2 85 52.9
Haze_14785 Corylus avellana HOM05D000086 ORTHO05D002912 1.8e-11 72.8 112 41.1
EL10Ac1g01285 Beta vulgaris HOM05D000086 ORTHO05D002912 2.3e-11 72.4 88 47.7
AT4G10150 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 3.1e-11 72.0 98 44.9
Aa31LG9G11850 Aethionema arabicum HOM05D000086 ORTHO05D002912 4.0e-11 71.6 110 43.6
Sp6g07260 Schrenkiella parvula HOM05D000086 ORTHO05D002912 4.0e-11 71.6 92 48.9
AUR62013394 Chenopodium quinoa HOM05D000086 ORTHO05D002912 1.2e-10 70.1 86 47.7
Carub.0006s2872 Capsella rubella HOM05D000086 ORTHO05D002912 2.0e-10 69.3 91 46.2
Thhalv10028921m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 2.0e-10 69.3 91 48.4
Nitab4.5_0007657g0010 Nicotiana tabacum HOM05D000086 ORTHO05D002912 2.0e-10 69.3 88 51.1
THA.LOC104815780 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 4.4e-10 68.2 94 47.9
CsaV3_5G039460 Cucumis sativus L. HOM05D000086 ORTHO05D002912 5.8e-10 67.8 89 47.2
HPP92_019417 Vanilla planifolia HOM05D000086 ORTHO05D002912 5.8e-10 67.8 89 46.1
ClCG08G001740 Citrullus lanatus HOM05D000086 ORTHO05D002912 7.6e-10 67.4 89 47.2
FvH4_2g00300 Fragaria vesca HOM05D000086 ORTHO05D002912 7.6e-10 67.4 104 44.2
Peaxi162Scf00078g01140 Petunia axillaris HOM05D000086 ORTHO05D002912 7.6e-10 67.4 105 44.8
AUR62038545 Chenopodium quinoa HOM05D000086 ORTHO05D002912 1.3e-09 66.6 86 47.7
FAN24G0014 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.3e-09 66.6 104 44.2
CARHR261240 Cardamine hirsuta HOM05D000086 ORTHO05D002912 2.2e-09 65.9 93 46.2
BcaB05g23913 Brassica carinata HOM05D000086 ORTHO05D002912 3.8e-09 65.1 113 41.6
Actinidia28220 Actinidia chinensis HOM05D000086 ORTHO05D002912 8.4e-09 63.9 43 74.4
A02p26680 Brassica napus HOM05D000086 ORTHO05D002912 8.4e-09 63.9 113 40.7
BraA02t07673Z Brassica rapa HOM05D000086 ORTHO05D002912 8.4e-09 63.9 113 40.7
BolC2t10283H Brassica oleracea HOM05D000086 ORTHO05D002912 1.1e-08 63.5 113 40.7
Gorai.005G117800 Gossypium raimondii HOM05D000086 ORTHO05D002912 1.1e-08 63.5 105 47.6
A05p24260 Brassica napus HOM05D000086 ORTHO05D002912 1.9e-08 62.8 83 48.2
BraA05t21318Z Brassica rapa HOM05D000086 ORTHO05D002912 1.9e-08 62.8 83 48.2
FAN20G1107 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.9e-08 62.8 107 38.3
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 5.4e-08 61.2 97 40.2
Ah.05g170470 Amaranthus hybridus HOM05D000086 ORTHO05D002912 1.6e-07 59.7 82 46.3
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 1.6e-07 59.7 87 44.8
Sopen06g022910 Solanum pennellii HOM05D000086 ORTHO05D002912 2.1e-07 59.3 44 63.6
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 3.5e-07 58.5 99 43.4
BcaC03g16413 Brassica carinata HOM05D000086 ORTHO05D002912 4.6e-07 58.2 114 36.0
Nitab4.5_0000079g0170 Nicotiana tabacum HOM05D000086 ORTHO05D002912 7.8e-07 57.4 101 45.5
Sed0006608 Sechium edule HOM05D000086 ORTHO05D002912 1.0e-06 57.0 108 39.8
ECA246G0663 Erigeron canadensis HOM05D000086 ORTHO05D002912 1.3e-06 56.6 83 39.8
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 1.3e-06 56.6 86 41.9
Lsat_1_v5_gn_6_109840 Lactuca sativa HOM05D000086 ORTHO05D002912 2.3e-06 55.8 87 40.2
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 3.0e-06 55.5 86 38.4
Sed0023160 Sechium edule HOM05D000086 ORTHO05D002912 3.0e-06 55.5 89 41.6
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 3.9e-06 55.1 95 34.7
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 5.1e-06 54.7 94 41.5
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 6.6e-06 54.3 82 43.9
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 6.6e-06 54.3 82 43.9
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 6.6e-06 54.3 94 41.5
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 6.6e-06 54.3 97 38.1


User provided reference genes

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