Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002578 Camellia sinensis var. sinensis HOM05D008944 ORTHO05D012715 0.0e+00 5021.8 3285 100.0
Dinv35105 Davidia involucrata HOM05D008944 ORTHO05D012715 0.0e+00 1469.9 3629 37.5
Dinv33443 Davidia involucrata HOM05D008944 ORTHO05D012715 0.0e+00 1255.4 3989 32.6
Rhsim08G0050800 Rhododendron simsii HOM05D008944 ORTHO05D012715 8.4e-309 1065.4 4578 28.7
vmacro18280 Vaccinium macrocarpon HOM05D008944 ORTHO05D012715 3.7e-272 943.7 3501 33.3
Actinidia36113 Actinidia chinensis HOM05D008944 ORTHO05D017205 7.7e-262 909.4 1798 40.8
Actinidia36114 Actinidia chinensis HOM05D008944 ORTHO05D012715 3.9e-165 588.2 1879 33.9
Actinidia05998 Actinidia chinensis HOM05D008944 ORTHO05D017205 2.9e-160 572.0 995 44.5
Actinidia05996 Actinidia chinensis HOM05D008944 ORTHO05D012715 5.9e-153 547.7 1843 32.0
GSVIVG01032411001 Vitis vinifera HOM05D000662 ORTHO05D012715 3.8e-107 395.6 2168 28.6
Rhsim10G0017100 Rhododendron simsii HOM05D008944 ORTHO05D017205 1.3e-70 274.2 2260 25.8
vmacro05865 Vaccinium macrocarpon HOM05D008944 ORTHO05D017205 6.3e-70 271.9 2121 26.0
TAR622G0869 Trochodendron aralioides HOM05D008944 ORTHO05D012260 5.9e-68 265.4 550 38.2
Lju41A41T31 Lonicera japonica HOM05D008944 ORTHO05D012260 1.2e-65 257.7 428 43.5
Cfa007371 Carpinus fangiana HOM05D018456 ORTHO05D024862 1.0e-56 228.0 1979 25.0
RhsimUnG0134000 Rhododendron simsii HOM05D008944 ORTHO05D012715 1.7e-54 220.7 622 34.9
Atru.chr6.2390 Acer truncatum HOM05D008944 ORTHO05D012260 2.8e-54 219.9 2103 26.0
TAR374G0422 Trochodendron aralioides HOM05D003163 ORTHO05D003504 1.2e-52 214.5 2180 24.2
Hma1.2p1_0999F.1_g246230 Hydrangea macrophylla HOM05D008944 ORTHO05D012260 1.5e-47 197.6 283 47.7
vmacro18281 Vaccinium macrocarpon HOM05D008944 ORTHO05D012715 4.4e-47 196.1 356 42.7
vmacro06767 Vaccinium macrocarpon HOM05D008944 ORTHO05D017205 3.1e-45 189.9 501 34.7
TAR622G0299 Trochodendron aralioides HOM05D008944 ORTHO05D012715 1.0e-43 184.9 3140 22.2
Ciclev10014006m.g Citrus clementina HOM05D018456 ORTHO05D012260 1.2e-41 177.9 1923 24.3
QL02p074766 Quercus lobata HOM05D018456 ORTHO05D024862 3.7e-38 166.4 2130 23.5
RhsimUnG0016800 Rhododendron simsii HOM05D008944 ORTHO05D012715 4.2e-34 152.9 247 44.9
Haze_14737 Corylus avellana HOM05D018456 ORTHO05D024862 1.6e-33 151.0 2182 22.8
Duzib264G0142 Durio zibethinus HOM05D010821 ORTHO05D012260 8.3e-30 138.7 1151 25.5
CiPaw.03G043400 Carya illinoinensis HOM05D018456 ORTHO05D024862 3.8e-27 129.8 2059 24.2
Duzib187G0380 Durio zibethinus HOM05D010821 ORTHO05D012260 9.8e-23 115.2 1324 24.6
Lju41C41G6 Lonicera japonica HOM05D008944 ORTHO05D012715 4.1e-21 109.8 850 25.1
Potri.001G345300 Populus trichocarpa HOM05D013434 ORTHO05D014659 1.2e-20 108.2 2029 23.5
COL.COLO4_29109 Corchorus olitorius HOM05D010821 ORTHO05D012260 5.9e-20 105.9 731 27.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 7.8e-20 105.5 182 43.4
Sabra16G0224300 Salix brachista HOM05D013434 ORTHO05D014659 1.0e-19 105.1 2023 23.2
Oeu054621.3 Olea europaea HOM05D039831 ORTHO05D036970 3.3e-18 100.1 2090 21.9
Thecc.04G017000 Theobroma cacao HOM05D010821 ORTHO05D012260 8.0e-17 95.5 2025 23.0
Nitab4.5_0007124g0010 Nicotiana tabacum HOM05D012441 ORTHO05D013726 1.2e-15 91.7 516 27.9
Cc07_g01740 Coffea canephora HOM05D008944 ORTHO05D012260 1.5e-15 91.3 183 38.3
Cpa.g.sc108.66 Carica papaya HOM05D008944 ORTHO05D012260 1.3e-14 88.2 261 33.7
Nitab4.5_0002468g0060 Nicotiana tabacum HOM05D012441 ORTHO05D013726 2.9e-14 87.0 437 30.2
TWI36G0429 Tripterygium wilfordii HOM05D013434 ORTHO05D014659 1.4e-13 84.7 2216 22.8
Sopen02g031170 Solanum pennellii HOM05D012441 ORTHO05D013726 1.9e-13 84.3 215 36.7
CAN.G473.9 Capsicum annuum HOM05D012441 ORTHO05D013726 9.2e-13 82.0 312 33.0
PGSC0003DMG400012631 Solanum tuberosum HOM05D012441 ORTHO05D013726 2.0e-12 80.9 419 27.9
Gohir.A05G355900 Gossypium hirsutum HOM05D010821 ORTHO05D012260 3.5e-12 80.1 1182 23.0
Gorai.012G064000 Gossypium raimondii HOM05D010821 ORTHO05D012260 4.3e-10 73.2 1606 23.2
Sc03g0007480 Simmondsia chinensis HOM05D008944 ORTHO05D019527 9.5e-10 72.0 460 25.4
Duzib147G0652 Durio zibethinus HOM05D010821 ORTHO05D029264 8.1e-09 68.9 2063 22.8
Gohir.D04G057300 Gossypium hirsutum HOM05D010821 ORTHO05D012260 1.1e-08 68.6 1556 22.8
Lju41A41T32 Lonicera japonica HOM05D008944 ORTHO05D017205 5.2e-08 66.2 290 28.3
Actinidia20633 Actinidia chinensis HOM05D008944 ORTHO05D017205 8.9e-08 65.5 106 43.4
Peaxi162Scf00129g01541 Petunia axillaris HOM05D012441 ORTHO05D013726 1.5e-07 64.7 546 24.4
Actinidia05997 Actinidia chinensis HOM05D008944 ORTHO05D017205 3.7e-06 60.1 161 36.0
vmacro03184 Vaccinium macrocarpon HOM05D008944 ORTHO05D017205 6.4e-06 59.3 224 31.7


User provided reference genes

Program Settings