Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.9e-162 573.5 292 100.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.1e-158 562.4 290 99.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.2e-131 470.7 258 94.2
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.6e-110 403.3 271 75.6
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 4.1e-106 388.7 272 75.4
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.0e-104 384.0 263 74.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.1e-102 376.3 272 73.9
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 5.2e-101 371.7 278 71.9
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-97 360.5 242 77.3
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.7e-96 356.7 265 67.5
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 6.5e-96 354.8 264 68.9
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 6.1e-94 348.2 264 70.5
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.0e-93 345.9 232 77.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 8.8e-93 344.4 276 64.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.2e-92 344.0 275 65.1
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.2e-91 339.7 262 67.9
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 7.0e-90 334.7 260 66.5
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.0e-90 334.7 263 65.8
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.1e-90 334.3 263 66.2
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-89 334.0 260 66.5
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-89 334.0 260 66.5
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-89 334.0 260 65.8
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 2.7e-89 332.8 261 64.4
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.3e-88 330.5 263 65.4
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 5.0e-88 328.6 264 64.4
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 8.5e-88 327.8 257 65.8
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.1e-87 327.4 259 64.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.1e-87 327.4 266 63.9
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 5.5e-87 325.1 271 63.1
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.7e-86 322.0 264 64.8
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.1e-86 321.6 262 64.1
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.4e-85 320.5 230 73.5
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.3e-85 319.7 260 63.1
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.5e-84 317.0 262 61.1
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.0e-84 316.6 271 60.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.0e-84 316.6 258 64.0
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 7.5e-84 314.7 262 61.5
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 2.2e-83 313.2 282 60.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 2.4e-82 309.7 270 60.0
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.1e-82 309.3 266 61.7
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.4e-82 308.5 211 81.0
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 5.4e-82 308.5 264 62.5
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 5.4e-82 308.5 283 59.0
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 7.0e-82 308.1 270 60.4
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.0e-82 308.1 266 60.9
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.2e-81 307.4 259 62.9
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 4.5e-81 305.4 262 60.7
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.5e-81 305.4 280 55.7
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 4.5e-81 305.4 257 64.2
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 5.9e-81 305.1 267 59.9
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.3e-80 303.9 263 59.3
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 5.0e-80 302.0 276 59.4
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 8.6e-80 301.2 263 59.7
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 1.9e-79 300.1 276 56.9
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.5e-79 299.7 274 57.7
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 6.1e-78 295.0 266 59.4
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 8.0e-78 294.7 261 62.5
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 4.0e-77 292.4 260 60.8
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 5.2e-77 292.0 260 60.4
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.2e-76 290.8 264 57.6
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 5.7e-76 288.5 264 59.8
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.4e-74 283.9 266 56.4
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.4e-74 283.1 255 59.6
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.0e-74 281.6 266 55.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.2e-74 281.2 262 56.1
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.2e-73 280.8 266 55.3
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 3.5e-73 279.3 270 55.9
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.0e-72 277.7 262 54.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.3e-72 277.3 262 55.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 8.6e-72 274.6 261 59.0
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.2e-70 270.8 260 56.9
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.8e-69 265.0 276 51.8
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.5e-68 263.8 261 54.8
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 2.6e-68 263.1 241 58.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 9.8e-68 261.2 254 55.1
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 3.7e-67 259.2 276 51.4
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 8.3e-67 258.1 261 52.9
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.1e-66 257.7 262 52.7
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.4e-66 257.3 259 54.8
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 9.2e-66 254.6 262 53.8
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.7e-65 253.1 254 54.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.5e-65 252.7 174 69.5
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 6.6e-64 248.4 260 55.4
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 8.6e-64 248.1 260 51.9
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.3e-63 245.7 259 55.2
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.2e-62 244.2 256 50.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.2e-62 244.2 260 53.1
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 6.2e-62 241.9 262 53.1
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.2e-62 241.9 205 61.5
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.8e-61 238.4 273 49.1
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 8.9e-61 238.0 283 48.4
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.2e-60 237.7 271 49.8
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-60 237.7 205 60.5
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.0e-60 236.9 274 50.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.6e-60 236.5 261 51.0
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.6e-60 236.5 261 51.0
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 9.8e-60 234.6 256 50.4
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-59 234.2 271 49.1
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.3e-59 234.2 177 64.4
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 3.7e-59 232.6 260 52.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 4.9e-59 232.3 261 52.5
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.4e-59 231.9 256 49.6
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.1e-58 231.1 256 50.8
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.1e-58 231.1 259 49.0
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.4e-58 230.7 261 52.9
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.4e-58 230.7 259 51.4
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.2e-58 229.6 258 51.2
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 5.4e-58 228.8 262 50.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 9.2e-58 228.0 268 51.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.7e-57 226.5 261 49.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 6.0e-57 225.3 263 50.2
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 6.0e-57 225.3 254 47.2
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 7.8e-57 224.9 270 48.9
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.3e-56 223.4 257 51.4
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 5.1e-56 222.2 259 48.6
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 6.6e-56 221.9 270 47.8
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.5e-55 220.7 260 53.5
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 5.6e-55 218.8 271 47.6
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.2e-54 217.6 170 65.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 2.1e-54 216.9 258 49.6
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.8e-54 216.5 259 49.8
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.6e-54 216.1 270 47.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.6e-54 216.1 270 47.8
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 4.7e-54 215.7 178 59.6
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 8.1e-54 214.9 178 59.6
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 8.1e-54 214.9 178 59.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 8.9e-53 211.5 272 46.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.6e-52 209.9 220 50.9
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.6e-52 209.9 264 48.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.2e-51 206.8 178 57.3
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 4.9e-51 205.7 270 45.6
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.1e-49 200.3 263 43.7
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.3e-48 197.6 261 45.2
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 5.1e-48 195.7 169 55.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.5e-47 194.1 274 43.4
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.9e-47 193.7 170 57.1
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.2e-44 184.5 255 43.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-44 184.1 105 88.6
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.4e-44 183.0 117 73.5
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.7e-43 180.6 174 55.7
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 4.9e-43 179.1 264 42.0
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 8.4e-43 178.3 273 42.9
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.4e-42 177.6 116 73.3
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.1e-40 169.1 150 55.3
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 5.1e-40 169.1 160 55.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.5e-39 167.5 159 56.6
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.1e-34 151.4 131 55.7
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.7e-27 127.5 128 49.2
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 4.2e-26 122.9 132 46.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.3e-24 117.1 82 70.7
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 4.8e-22 109.4 256 32.4
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-16 91.3 70 62.9
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 5.7e-15 85.9 299 29.1
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 5.7e-15 85.9 143 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 3.7e-14 83.2 90 40.0
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 5.3e-13 79.3 193 28.0
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 6.9e-13 79.0 131 31.3
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.5e-07 61.2 275 26.9
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-06 57.0 93 32.3


User provided reference genes

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