Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 2.3e-105 385.6 198 100.0
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 3.6e-82 308.5 198 77.8
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 3.1e-81 305.4 201 77.6
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.2e-80 303.5 198 80.3
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.3e-79 300.1 203 75.9
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 5.3e-73 278.1 246 63.0
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.4e-70 270.0 189 72.5
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 7.9e-69 264.2 187 69.0
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.8e-68 263.1 189 70.4
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 2.3e-68 262.7 197 71.1
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 3.0e-68 262.3 177 76.8
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 3.9e-68 261.9 187 68.4
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.5e-67 260.0 187 69.5
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 1.9e-67 259.6 197 66.0
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 4.3e-67 258.5 184 73.4
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 7.4e-67 257.7 184 71.2
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.6e-66 256.5 196 66.3
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 1.6e-66 256.5 187 66.8
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.6e-66 256.5 198 66.7
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 4.8e-66 255.0 199 67.3
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.8e-65 253.1 191 68.1
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 3.1e-65 252.3 187 70.6
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.0e-65 251.9 196 66.8
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 6.9e-65 251.1 188 67.0
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 2.0e-64 249.6 198 67.2
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.4e-64 248.8 199 62.8
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.0e-63 247.3 198 65.7
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.0e-63 247.3 191 66.5
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 1.0e-63 247.3 200 65.5
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 1.3e-63 246.9 221 62.4
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 1.7e-63 246.5 185 68.6
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.7e-63 246.5 199 62.3
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.7e-63 246.5 199 62.3
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.7e-63 246.5 198 66.2
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.2e-63 246.1 198 66.2
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 2.9e-63 245.7 211 64.9
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.9e-63 245.7 185 71.9
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 8.4e-63 244.2 198 60.6
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 1.4e-62 243.4 199 62.8
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.5e-62 242.7 202 61.9
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 3.2e-62 242.3 185 64.3
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 7.1e-62 241.1 176 66.5
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 9.3e-62 240.7 199 62.3
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.2e-61 240.4 202 63.4
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 3.5e-61 238.8 193 62.7
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 4.6e-61 238.4 195 68.2
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 4.6e-61 238.4 204 60.8
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.3e-60 236.9 199 62.8
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.8e-60 236.5 219 57.5
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 3.0e-60 235.7 195 61.0
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 3.9e-60 235.3 200 61.0
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 1.1e-59 233.8 181 67.4
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.1e-59 233.8 208 58.2
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 1.9e-59 233.0 198 61.6
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 1.9e-59 233.0 198 63.1
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 2.5e-59 232.6 204 59.8
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 2.5e-59 232.6 182 63.7
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 4.3e-59 231.9 186 63.4
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 9.6e-59 230.7 186 60.8
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 1.3e-58 230.3 199 59.8
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 6.3e-58 228.0 200 59.5
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.1e-57 227.3 200 59.5
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 3.1e-57 225.7 183 61.7
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 4.1e-57 225.3 192 59.4
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 6.9e-57 224.6 195 60.0
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.2e-56 223.8 182 62.6
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 7.6e-56 221.1 183 59.6
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 1.0e-55 220.7 200 61.0
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.3e-55 220.3 186 59.7
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.7e-55 219.9 183 59.6
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 5.0e-55 218.4 202 58.9
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 5.0e-55 218.4 189 58.2
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 5.0e-55 218.4 177 60.5
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 8.4e-55 217.6 190 58.4
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 2.1e-53 213.0 187 59.4
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 3.5e-53 212.2 198 56.6
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 2.3e-52 209.5 185 62.2
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 5.7e-51 204.9 164 62.2
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 1.3e-47 193.7 183 57.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 5.0e-47 191.8 193 55.4
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 8.5e-47 191.0 190 54.2
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 3.2e-46 189.1 182 54.4
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.6e-45 186.8 183 53.0
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 6.1e-45 184.9 176 56.2
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.8e-44 183.3 176 57.4
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 2.0e-43 179.9 173 56.6
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 3.3e-43 179.1 200 51.0
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 1.3e-42 177.2 173 55.5
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.8e-41 173.3 176 53.4
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 4.1e-41 172.2 176 52.3
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 6.9e-41 171.4 203 51.7
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 1.2e-40 170.6 176 52.8
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.0e-40 169.9 189 50.3
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 2.6e-40 169.5 176 52.8
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 4.5e-40 168.7 177 53.1
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.0e-39 167.5 177 52.5
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 1.7e-39 166.8 200 50.0
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.7e-39 166.8 179 53.6
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.9e-39 166.0 194 50.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 2.9e-39 166.0 176 54.0
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.9e-39 166.0 194 50.5
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 6.5e-39 164.9 165 51.5
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 2.5e-38 162.9 124 66.9
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 6.1e-37 158.3 127 63.8
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 1.5e-35 153.7 122 59.8
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 5.7e-35 151.8 176 48.9
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.1e-33 147.5 185 41.6
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 9.1e-33 144.4 92 73.9
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.8e-31 139.0 169 48.5
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 7.2e-30 134.8 107 64.5
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.0e-28 131.0 99 69.7
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 8.0e-21 104.8 191 34.6
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 6.8e-20 101.7 202 34.7
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 9.8e-19 97.8 190 37.4
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 7.2e-14 81.6 120 42.5
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 1.1e-09 67.8 186 29.0
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.7e-07 60.5 39 71.8


User provided reference genes

Program Settings