Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.8e-66 255.8 124 100.0
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.1e-57 226.5 124 88.7
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 4.1e-55 218.0 124 86.3
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 6.9e-55 217.2 124 85.5
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 2.2e-53 212.2 124 83.1
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 6.5e-53 210.7 123 82.9
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 1.4e-52 209.5 124 82.3
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 2.5e-52 208.8 124 80.6
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 3.2e-52 208.4 124 81.5
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 5.5e-52 207.6 124 80.6
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.1e-51 205.7 124 80.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 2.1e-51 205.7 124 79.8
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 3.5e-51 204.9 124 78.2
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 6.1e-51 204.1 124 78.2
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 7.9e-51 203.8 124 80.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.0e-50 203.4 124 79.0
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 1.3e-50 203.0 124 79.8
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.8e-50 202.6 124 75.8
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 1.8e-50 202.6 124 77.4
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.8e-50 202.6 123 79.7
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.8e-50 202.6 124 79.8
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 3.0e-50 201.8 124 78.2
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 3.0e-50 201.8 124 78.2
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 3.9e-50 201.4 124 81.5
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 3.9e-50 201.4 124 82.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 6.7e-50 200.7 124 78.2
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 8.7e-50 200.3 124 74.2
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 8.7e-50 200.3 124 78.2
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.5e-49 199.5 124 77.4
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.9e-49 199.1 124 76.6
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.9e-49 199.1 124 77.4
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.9e-49 199.1 124 76.6
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.9e-49 199.1 124 80.6
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.9e-49 199.1 123 76.4
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 3.3e-49 198.4 123 78.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 5.7e-49 197.6 123 77.2
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.3e-48 196.4 124 78.2
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.3e-48 196.4 124 78.2
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.3e-48 196.4 124 77.4
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.6e-48 196.1 124 76.6
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 2.2e-48 195.7 124 74.2
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 2.8e-48 195.3 122 81.1
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.8e-48 195.3 123 75.6
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.8e-48 195.3 151 67.5
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 6.3e-48 194.1 123 75.6
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 8.2e-48 193.7 122 76.2
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.4e-47 193.0 121 77.7
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.8e-47 192.6 124 75.8
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.4e-47 192.2 124 78.2
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 3.1e-47 191.8 123 74.0
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 3.1e-47 191.8 124 72.6
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 3.1e-47 191.8 123 74.8
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 3.1e-47 191.8 123 74.0
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 4.1e-47 191.4 124 75.8
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 6.9e-47 190.7 123 70.7
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 9.0e-47 190.3 124 77.4
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 9.0e-47 190.3 123 73.2
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.5e-46 189.5 124 75.8
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.5e-46 189.5 124 77.4
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.5e-46 189.5 124 77.4
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.5e-46 189.5 124 75.0
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 2.6e-46 188.7 123 74.8
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.0e-45 186.8 123 72.4
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 1.3e-45 186.4 123 75.6
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 2.2e-45 185.7 191 55.0
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.9e-45 185.3 123 74.8
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 3.8e-45 184.9 123 72.4
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.5e-45 183.7 124 75.0
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 8.5e-45 183.7 124 68.5
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.1e-44 183.3 123 69.9
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 1.1e-44 183.3 121 72.7
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.4e-44 183.0 123 72.4
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.4e-44 183.0 123 70.7
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 3.2e-44 181.8 123 70.7
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 3.2e-44 181.8 123 71.5
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 3.2e-44 181.8 123 72.4
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 3.2e-44 181.8 123 69.9
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 5.5e-44 181.0 123 72.4
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 5.5e-44 181.0 123 71.5
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 1.2e-43 179.9 123 71.5
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 3.6e-43 178.3 124 70.2
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 3.6e-43 178.3 123 69.9
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 7.9e-43 177.2 123 68.3
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 7.9e-43 177.2 123 69.1
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-42 176.8 120 72.5
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.0e-42 176.8 120 71.7
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.4e-42 176.4 122 72.1
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.8e-42 176.0 124 68.5
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.8e-42 176.0 123 67.5
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.3e-42 175.6 123 69.1
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 3.7e-40 168.3 109 73.4
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 4.8e-40 167.9 123 66.7
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 5.3e-39 164.5 102 76.5
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 1.1e-36 156.8 121 67.8
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 9.4e-36 153.7 121 58.7
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.5e-29 131.0 94 72.3
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 8.5e-29 130.6 84 72.6
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.9e-28 129.4 124 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 7.2e-28 127.5 123 50.4
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 4.7e-27 124.8 108 61.1
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 3.7e-24 115.2 123 46.3
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 7.0e-23 110.9 69 76.8
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 3.5e-22 108.6 124 45.2
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 9.4e-20 100.5 122 43.4
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.2e-19 100.1 55 83.6
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 4.7e-19 98.2 55 83.6
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 5.2e-18 94.7 55 80.0
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 4.1e-15 85.1 48 87.5
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 4.5e-14 81.6 53 75.5
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 2.3e-10 69.3 56 60.7
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 3.0e-10 68.9 42 73.8
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 4.9e-08 61.6 128 33.6
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 4.9e-08 61.6 51 60.8


User provided reference genes

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