Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002521 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.8e-38 162.2 84 100.0
CSS0029543 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 4.6e-26 120.9 63 96.8
CSS0029505 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 6.0e-26 120.6 64 95.3
CSS0028067 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 8.6e-25 116.7 66 90.9
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.9e-08 62.4 79 54.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.8e-07 58.5 39 79.5
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.1e-06 55.1 58 55.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.1e-06 55.1 30 90.0
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 4.0e-06 54.7 35 74.3
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-06 54.3 58 55.2
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-06 54.3 58 55.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 5.2e-06 54.3 58 55.2
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 5.2e-06 54.3 58 55.2
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 5.2e-06 54.3 37 75.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.2e-06 54.3 37 75.7
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.2e-06 54.3 30 90.0
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.2e-06 54.3 37 75.7
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.9e-06 53.9 48 62.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.9e-06 53.9 30 90.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 9.0e-06 53.5 58 55.2


User provided reference genes

Program Settings