Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.0e-81 305.1 147 100.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 9.3e-67 256.9 145 83.4
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 8.7e-65 250.4 143 81.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 5.3e-62 241.1 140 82.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 9.0e-62 240.4 147 76.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.7e-60 236.1 138 78.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.2e-60 235.7 144 75.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.8e-60 235.0 139 78.4
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.8e-60 235.0 138 77.5
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 5.0e-60 234.6 138 76.8
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 6.5e-60 234.2 139 78.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 6.5e-60 234.2 151 73.5
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.1e-59 233.4 141 75.2
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.4e-59 233.0 138 76.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.5e-59 232.3 138 76.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.5e-59 232.3 138 76.8
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.2e-59 231.9 141 74.5
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 4.2e-59 231.5 137 75.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 4.2e-59 231.5 147 72.1
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 9.4e-59 230.3 141 73.8
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.2e-58 229.9 138 79.0
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.2e-58 229.9 137 74.5
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 6.1e-58 227.6 138 74.6
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.1e-58 227.6 137 76.6
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 7.9e-58 227.3 138 78.3
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.0e-57 226.9 143 72.0
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 6.7e-57 224.2 139 74.1
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 8.8e-57 223.8 144 76.4
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.5e-56 223.0 138 75.4
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.5e-56 223.0 155 68.4
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.9e-56 222.6 149 69.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.9e-56 222.6 144 70.1
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.3e-56 221.9 142 74.6
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 5.7e-56 221.1 149 71.1
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 7.4e-56 220.7 151 71.5
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 2.8e-55 218.8 144 72.9
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 8.2e-55 217.2 141 68.8
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 5.3e-54 214.5 147 70.1
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 5.3e-54 214.5 135 70.4
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.5e-53 213.0 139 73.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.5e-53 213.0 148 67.6
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.0e-53 212.6 137 73.0
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.6e-53 212.2 148 68.9
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 3.4e-53 211.8 138 70.3
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 4.5e-53 211.5 141 71.6
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 4.5e-53 211.5 143 69.9
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 7.7e-53 210.7 137 69.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.3e-52 209.9 147 68.0
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.7e-52 209.5 143 69.2
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.2e-52 209.1 134 73.9
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 2.9e-52 208.8 137 73.0
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.9e-52 208.8 155 65.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 3.8e-52 208.4 141 69.5
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.8e-52 208.4 148 66.9
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.4e-51 206.5 122 79.5
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.2e-51 205.3 135 68.9
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 5.5e-51 204.5 134 70.9
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 7.2e-51 204.1 141 68.1
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 9.4e-51 203.8 139 67.6
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 133 70.7
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.6e-50 203.0 139 68.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.6e-50 203.0 139 68.3
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 2.1e-50 202.6 141 68.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.7e-50 202.2 132 72.0
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 3.6e-50 201.8 141 68.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 4.7e-50 201.4 139 67.6
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.9e-50 200.7 145 65.5
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 7.9e-50 200.7 147 63.3
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 7.9e-50 200.7 141 68.1
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.9e-50 200.7 139 67.6
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.0e-49 200.3 140 65.7
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.4e-49 199.9 158 62.0
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.4e-49 199.9 140 64.3
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.3e-49 199.1 147 64.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.3e-49 199.1 147 65.3
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.3e-49 199.1 147 64.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.3e-49 199.1 147 64.6
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.3e-49 199.1 140 67.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.0e-49 198.7 141 69.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.0e-49 198.7 141 69.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.0e-49 198.7 141 69.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.9e-49 198.4 147 64.6
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.9e-49 198.4 211 51.7
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 5.1e-49 198.0 147 65.3
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 5.1e-49 198.0 138 66.7
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 5.1e-49 198.0 139 64.7
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 6.7e-49 197.6 140 60.7
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 2.0e-48 196.1 129 69.0
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.0e-48 196.1 135 67.4
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.7e-48 194.5 140 60.0
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 7.4e-48 194.1 135 64.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 7.4e-48 194.1 135 64.4
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.4e-48 194.1 132 69.7
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.7e-47 193.0 139 65.5
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.8e-47 192.2 131 69.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 3.7e-47 191.8 129 68.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 3.7e-47 191.8 128 69.5
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 4.8e-47 191.4 129 67.4
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.3e-47 191.0 132 69.7
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-46 189.5 132 68.9
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.4e-46 189.1 126 71.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.1e-46 188.7 140 64.3
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.1e-46 188.3 131 68.7
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 9.1e-46 187.2 129 66.7
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 9.1e-46 187.2 132 66.7
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.6e-45 185.7 122 68.0
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 8.5e-44 180.6 129 62.0
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.9e-43 179.5 137 60.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 5.5e-43 177.9 147 59.9
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 9.4e-43 177.2 121 67.8
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.8e-41 172.9 139 54.7
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.3e-41 172.6 122 64.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.0e-40 169.5 125 63.2
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-38 163.7 112 67.9
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 5.9e-37 157.9 216 40.7
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.9e-35 152.9 135 55.6
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-33 146.0 129 55.0
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.0e-32 142.9 80 83.8
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.7e-31 139.8 131 47.3
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.8e-31 139.0 131 45.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 4.1e-30 135.2 133 45.1
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 7.0e-30 134.4 86 73.3
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-29 133.7 121 52.1
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 2.2e-28 129.4 121 50.4
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 8.5e-28 127.5 83 72.3
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 8.5e-28 127.5 121 49.6
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.5e-27 125.9 134 42.5
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 5.5e-27 124.8 106 53.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 7.2e-27 124.4 80 76.2
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.8e-25 119.8 94 67.0
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.0e-24 116.3 142 39.4
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.0e-24 116.3 95 55.8
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.8e-23 112.5 79 65.8
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 4.1e-22 108.6 162 37.0
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.7e-20 103.2 136 39.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.2e-19 98.6 134 36.6
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 9.5e-19 97.4 89 56.2
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 4.4e-16 88.6 143 31.5
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.8e-15 85.9 55 70.9
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 8.3e-15 84.3 58 65.5
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.1e-14 84.0 55 69.1
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.8e-14 83.2 143 28.7
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-14 83.2 72 51.4
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 2.5e-11 72.8 106 35.8
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 3.2e-06 55.8 36 75.0


User provided reference genes

Program Settings