Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 2199.5 1151 100.0
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2038.5 1167 92.2
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2026.5 1169 91.7
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2018.0 1166 90.0
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2007.6 1166 90.1
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1983.8 1166 88.8
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1969.1 1172 88.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1966.0 1173 88.4
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1963.7 1176 88.4
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1963.3 1164 87.6
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1168 88.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1956.8 1169 87.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1956.0 1167 88.1
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1955.3 1165 87.3
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1955.3 1165 87.3
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1954.1 1164 87.4
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1940.6 1207 86.2
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1940.2 1174 87.5
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1939.1 1164 86.7
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1936.0 1168 86.4
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1935.6 1165 86.8
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1172 87.2
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1932.1 1212 83.7
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1927.9 1165 86.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1927.5 1169 87.1
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1166 86.5
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1165 86.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1921.4 1164 84.4
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1921.0 1175 86.9
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1921.0 1165 85.0
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1171 85.7
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1165 84.5
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1917.1 1168 85.8
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1165 86.3
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1165 86.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1164 85.5
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1159 86.1
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1165 84.8
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1911.0 1092 89.3
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1165 85.8
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1164 84.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1166 86.6
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1908.6 1177 85.0
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1169 85.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1906.3 1167 85.0
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1171 85.8
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1905.6 1171 85.8
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1904.4 1164 85.1
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1164 84.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1171 85.7
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1898.2 1167 85.6
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1896.7 1165 85.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1894.8 1166 84.3
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1894.0 1169 84.9
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1889.4 1177 83.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1169 84.8
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1324 77.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1886.7 1204 83.5
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1886.7 1165 82.7
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1885.5 1176 84.9
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1884.8 1167 84.6
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1879.4 1164 84.7
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1878.6 1197 83.3
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1169 84.5
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1874.0 1174 84.2
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1872.4 1179 83.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1872.1 1170 84.0
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1176 83.6
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1868.2 1155 85.7
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1861.3 1172 83.4
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1857.0 1174 83.5
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1847.0 1172 83.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1846.6 1172 82.6
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1845.9 1169 83.5
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1845.9 1164 83.3
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1845.1 1090 86.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1838.5 1173 82.9
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1837.8 1173 82.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1837.8 1167 82.3
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1836.6 1171 82.7
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1836.6 1171 82.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1836.6 1165 82.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1834.7 1167 82.4
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1832.0 1167 82.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1825.8 1168 83.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1821.6 1184 81.6
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1800.0 1091 83.7
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1793.9 1175 81.7
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1785.8 1166 78.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1781.5 1177 79.7
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1764.6 1195 80.1
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1705.3 1168 74.5
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1696.4 1154 77.1
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1684.1 1164 76.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1666.7 1171 74.6
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1639.0 995 85.9
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1573.5 1166 69.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1570.1 1167 69.6
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1560.8 1151 75.4
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1518.1 940 83.9
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1438.3 848 88.1
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1433.7 1160 65.7
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1414.1 1163 63.1
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1372.5 1159 61.8
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1366.3 1177 61.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1365.9 1160 61.7
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1361.3 840 83.6
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1318.9 800 85.0
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1246.1 797 80.1
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1173.3 696 87.4
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1171.4 788 76.8
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1108.2 576 99.8
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1075.8 919 61.3
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 3.4e-297 1025.4 1106 48.3
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.1e-291 1004.2 730 73.3
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 4.6e-286 988.4 653 79.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.5e-276 956.1 599 83.8
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.1e-274 950.7 546 89.4
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.6e-267 926.8 594 82.3
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.1e-246 856.7 626 71.4
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.1e-242 844.3 516 81.0
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.3e-208 731.1 464 85.8
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.8e-202 710.7 434 89.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.4e-202 710.3 466 76.8
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 3.8e-155 553.5 357 81.8
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.8e-150 536.6 354 81.6
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.7e-113 414.5 378 56.1
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 9.7e-111 406.0 279 74.6
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.4e-93 348.2 195 89.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.9e-61 242.3 168 79.8
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 4.2e-53 214.5 143 79.7
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.9e-46 191.0 117 87.2
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.0e-39 169.1 87 95.4
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 2.7e-36 158.7 103 82.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.8e-35 156.0 109 78.0
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 5.1e-35 154.5 96 86.5
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.1e-34 153.3 78 93.6
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.3e-19 102.4 82 63.4
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.9e-19 101.7 82 64.6
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 6.7e-19 100.9 84 67.9
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.9e-15 87.8 55 80.0
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 7.7e-15 87.4 49 81.6
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 7.7e-15 87.4 47 87.2
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 1.7e-14 86.3 97 68.0
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 7.7e-07 60.8 57 57.9
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.0e-06 60.5 35 77.1
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.9e-06 58.9 337 26.1


User provided reference genes

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