Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.8e-177 625.5 419 100.0
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.6e-172 609.8 419 98.1
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.1e-63 247.3 436 46.8
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.2e-53 214.9 467 47.8
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.9e-51 207.6 424 38.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 5.4e-51 206.1 398 39.2
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.0e-50 202.6 425 36.7
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 3.3e-48 196.8 256 47.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.1e-47 194.1 194 54.6
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 6.2e-47 192.6 457 41.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 2.6e-45 187.2 250 48.0
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 3.7e-44 183.3 204 52.5
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.4e-43 180.6 138 64.5
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 7.0e-43 179.1 422 34.1
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.2e-42 178.3 137 64.2
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.6e-42 177.9 269 42.4
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.6e-42 177.9 184 53.3
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.1e-42 177.6 421 35.6
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 2.7e-42 177.2 165 57.0
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.8e-42 175.6 134 64.9
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.3e-41 174.1 193 50.8
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 3.9e-41 173.3 442 33.5
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 3.9e-41 173.3 269 42.8
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 5.0e-41 172.9 258 43.0
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 5.0e-41 172.9 425 40.5
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.6e-41 172.6 418 34.0
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 8.6e-41 172.2 243 45.7
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 8.6e-41 172.2 418 31.3
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 8.6e-41 172.2 253 42.3
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.1e-40 171.8 236 44.5
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.5e-40 171.4 267 43.8
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.5e-40 171.4 234 44.0
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.5e-40 171.4 277 43.7
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 3.3e-40 170.2 228 44.7
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 4.3e-40 169.9 228 44.3
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.3e-40 169.9 447 31.1
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 7.3e-40 169.1 414 32.6
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.2e-39 168.3 434 31.3
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.2e-39 168.3 134 64.9
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.6e-39 167.9 236 44.1
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.7e-39 166.4 217 45.2
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.7e-39 166.4 276 38.4
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 6.2e-39 166.0 137 58.4
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 8.1e-39 165.6 418 31.1
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.1e-39 165.6 234 43.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 2.3e-38 164.1 416 33.2
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.0e-38 163.3 270 41.5
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.2e-37 161.8 181 51.4
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 2.0e-37 161.0 250 42.4
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.6e-37 160.6 187 50.3
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 2.6e-37 160.6 135 58.5
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 3.4e-37 160.2 270 39.6
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.4e-37 159.8 235 43.8
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 5.8e-37 159.5 207 48.3
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 7.5e-37 159.1 286 39.5
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 9.9e-37 158.7 238 42.9
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.3e-36 158.3 135 56.3
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.3e-36 158.3 428 30.8
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 6.4e-36 156.0 206 44.2
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 8.3e-36 155.6 137 54.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 8.3e-36 155.6 172 51.2
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 8.3e-36 155.6 187 47.6
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 8.3e-36 155.6 275 40.4
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 3.2e-35 153.7 265 39.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 3.2e-35 153.7 473 38.1
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 7.1e-35 152.5 428 30.6
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 7.1e-35 152.5 284 39.4
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.2e-34 151.8 250 42.8
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.6e-34 151.4 137 52.6
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.6e-34 151.4 137 52.6
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.6e-34 151.4 236 37.3
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 2.1e-34 151.0 137 52.6
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 2.1e-34 151.0 236 42.4
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 2.7e-34 150.6 137 52.6
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 2.7e-34 150.6 137 51.8
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.5e-34 150.2 143 51.7
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 6.0e-34 149.4 186 47.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.0e-33 148.7 191 45.5
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.3e-33 148.3 191 47.1
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.7e-33 147.9 137 54.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 3.0e-33 147.1 315 35.9
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 5.1e-33 146.4 138 52.2
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 6.6e-33 146.0 137 52.6
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 8.6e-33 145.6 209 42.1
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.1e-32 145.2 246 37.8
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.9e-32 144.4 475 28.8
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 3.3e-32 143.7 257 37.4
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 4.3e-32 143.3 145 49.7
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 4.3e-32 143.3 181 42.0
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 7.3e-32 142.5 188 42.6
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.2e-31 141.7 139 51.8
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.1e-31 141.0 135 53.3
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.8e-31 140.6 133 54.1
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.1e-30 138.7 134 53.0
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 5.2e-30 136.3 131 53.4
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 6.8e-30 136.0 246 37.8
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.5e-29 134.8 97 62.9
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.6e-29 134.0 136 50.7
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 2.6e-29 134.0 131 54.2
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.6e-29 134.0 128 52.3
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.4e-29 133.7 248 37.9
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 4.9e-28 129.8 188 44.1
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.4e-27 127.5 137 46.7
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 9.2e-27 125.6 183 37.7
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.6e-26 124.8 130 47.7
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 2.1e-26 124.4 216 39.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.0e-26 122.9 137 51.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.7e-25 121.3 145 47.6
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.3e-25 120.9 130 46.2
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 2.3e-25 120.9 130 46.2
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 6.6e-25 119.4 458 26.4
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.9e-24 117.9 264 34.1
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 2.5e-24 117.5 137 44.5
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 2.5e-24 117.5 146 45.9
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 4.7e-23 113.2 137 44.5
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 4.7e-23 113.2 136 49.3
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 4.7e-23 113.2 185 38.9
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.1e-22 112.1 119 50.4
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.8e-22 111.3 137 43.8
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 3.9e-17 93.6 195 33.8
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.7e-17 92.4 83 53.0
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.9e-16 91.3 228 34.2
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.6e-16 89.7 106 44.3
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.1e-15 87.8 190 32.1
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.4e-13 80.5 59 61.0
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 9.9e-13 79.0 59 59.3
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 4.9e-12 76.6 137 38.0
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 3.2e-11 73.9 271 26.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 9.3e-11 72.4 175 33.1
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 2.1e-10 71.2 139 33.1
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 3.0e-09 67.4 100 33.0
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 9.6e-08 62.4 72 43.1
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.1e-07 61.2 209 26.8
Os12g0165200 Oryza sativa ssp. japonica HOM05D005242 ORTHO05D006778 4.8e-07 60.1 132 27.3
Pp3c19_14230 Physcomitrium patens HOM05D000136 ORTHO05D000080 8.1e-07 59.3 93 35.5
Pp3c8_6770 Physcomitrium patens HOM05D000136 ORTHO05D000080 1.8e-06 58.2 95 33.7
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 2.4e-06 57.8 94 35.1
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.4e-06 57.8 98 36.7
Carub.0002s0540 Capsella rubella HOM05D000136 ORTHO05D000080 5.3e-06 56.6 94 34.0
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 5.3e-06 56.6 139 29.5
Nitab4.5_0004295g0070 Nicotiana tabacum HOM05D000136 ORTHO05D000080 9.0e-06 55.8 92 34.8
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 9.0e-06 55.8 203 25.6


User provided reference genes

Program Settings