Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 6.9e-116 420.6 207 100.0
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 1.9e-102 375.9 207 86.5
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 4.0e-100 368.2 205 84.9
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 3.4e-99 365.2 203 85.7
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 4.5e-99 364.8 208 84.6
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 5.8e-99 364.4 206 83.5
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 7.6e-99 364.0 203 85.2
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.9e-98 362.1 201 85.6
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.9e-98 362.1 201 85.6
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 1.1e-97 360.1 202 85.1
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 2.5e-97 359.0 198 83.8
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 4.2e-97 358.2 203 84.7
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 4.2e-97 358.2 205 83.9
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 5.5e-97 357.8 202 83.7
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 5.5e-97 357.8 202 84.2
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 7.1e-97 357.5 195 85.1
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 9.3e-97 357.1 202 83.2
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 1.2e-96 356.7 201 84.1
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 1.6e-96 356.3 197 83.8
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 1.6e-96 356.3 201 84.1
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 2.1e-96 355.9 207 83.1
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 2.1e-96 355.9 202 83.2
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.7e-96 355.5 197 84.3
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 2.7e-96 355.5 198 83.3
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 2.7e-96 355.5 203 82.8
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 2.7e-96 355.5 201 84.6
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.7e-96 355.5 209 83.3
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 3.5e-96 355.1 202 83.7
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 3.5e-96 355.1 205 83.4
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 6.0e-96 354.4 207 84.1
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 7.9e-96 354.0 198 83.3
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.0e-95 353.6 202 83.2
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.0e-95 353.6 202 82.2
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 1.3e-95 353.2 201 83.6
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.3e-95 353.2 201 83.6
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 1.8e-95 352.8 197 83.2
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 3.9e-95 351.7 197 82.7
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.9e-95 351.7 201 83.1
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 8.7e-95 350.5 203 82.3
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 1.1e-94 350.1 189 87.8
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.9e-94 349.4 200 82.0
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 2.5e-94 349.0 203 81.8
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 2.5e-94 349.0 197 82.7
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 9.7e-94 347.1 204 81.9
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 9.7e-94 347.1 205 81.0
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.3e-93 346.7 200 81.5
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 1.3e-93 346.7 200 80.5
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 1.6e-93 346.3 198 81.8
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 1.6e-93 346.3 198 82.3
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 4.8e-93 344.7 199 81.4
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 8.2e-93 344.0 233 73.4
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 1.8e-92 342.8 195 81.5
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.8e-92 342.8 200 82.0
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 1.8e-92 342.8 201 81.1
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 2.4e-92 342.4 201 80.6
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 6.9e-92 340.9 201 81.1
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.5e-91 339.7 203 79.8
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 1.5e-91 339.7 187 83.4
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 2.0e-91 339.3 205 82.9
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 1.3e-90 336.7 223 74.0
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 5.0e-90 334.7 221 76.0
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 5.0e-90 334.7 192 80.2
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 1.4e-89 333.2 214 75.2
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 2.5e-89 332.4 202 80.2
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 3.2e-89 332.0 200 78.5
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 1.6e-88 329.7 196 80.1
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 2.1e-88 329.3 200 80.0
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 2.1e-88 329.3 200 80.0
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 7.9e-88 327.4 200 77.0
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 7.9e-88 327.4 194 79.4
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 3.0e-87 325.5 194 78.9
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 6.7e-87 324.3 205 75.1
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 1.4e-84 316.6 173 85.0
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.4e-84 315.8 201 77.6
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 3.1e-84 315.5 250 64.8
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 4.1e-84 315.1 243 66.7
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 1.2e-83 313.5 201 78.1
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 5.9e-83 311.2 201 76.6
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 1.4e-81 306.6 193 77.7
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 7.2e-81 304.3 189 76.2
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 1.2e-80 303.5 205 71.7
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 2.1e-80 302.8 191 78.0
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 2.7e-80 302.4 207 72.9
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 6.1e-80 301.2 198 73.7
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 1.1e-78 297.0 204 76.0
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 1.5e-78 296.6 211 72.0
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 4.1e-76 288.5 188 71.3
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 2.6e-75 285.8 205 70.2
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 3.4e-75 285.4 229 62.9
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 2.2e-74 282.7 157 82.8
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 1.4e-73 280.0 156 82.7
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 8.0e-72 274.2 254 58.7
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 2.3e-71 272.7 212 70.8
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 1.7e-66 256.5 144 80.6
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 8.5e-66 254.2 207 62.8
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 1.2e-64 250.4 137 81.8
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 1.2e-64 250.4 205 64.4
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 2.1e-64 249.6 187 64.7
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 5.2e-63 245.0 224 60.3
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.2e-62 243.8 180 63.9
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 1.2e-62 243.8 195 62.1
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 2.6e-62 242.7 138 79.0
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 2.2e-58 229.6 140 80.0
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 2.7e-56 222.6 187 57.2
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 3.6e-56 222.2 199 60.3
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 5.7e-54 214.9 116 83.6
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 7.0e-52 208.0 138 71.7
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 2.7e-51 206.1 113 78.8
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 8.6e-50 201.1 178 54.5
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 1.2e-48 197.2 129 69.8
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 2.1e-48 196.4 108 79.6
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 3.6e-48 195.7 144 66.0
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 8.9e-47 191.0 180 60.0
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.1e-44 184.1 194 49.5
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 2.0e-38 163.3 93 87.1
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 2.2e-37 159.8 85 91.8
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 4.9e-37 158.7 92 83.7
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 1.1e-36 157.5 101 70.3
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 2.4e-36 156.4 94 74.5
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 9.2e-36 154.5 89 87.6
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 2.7e-35 152.9 81 92.6
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 7.8e-35 151.4 93 82.8
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 5.6e-33 145.2 97 68.0
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 8.9e-31 137.9 86 70.9
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 3.4e-30 136.0 74 79.7
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.2e-22 110.9 66 74.2
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 6.6e-18 95.1 61 70.5
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 3.3e-17 92.8 48 81.2
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 2.0e-14 83.6 61 67.2
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 4.4e-14 82.4 55 65.5
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.1e-12 77.8 43 88.4
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 7.1e-12 75.1 220 30.5
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 3.5e-11 72.8 37 89.2
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 6.0e-11 72.0 46 78.3
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.0e-10 71.2 68 52.9
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 1.7e-10 70.5 37 86.5
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 6.6e-10 68.6 39 79.5
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 2.5e-09 66.6 138 34.8
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 2.5e-09 66.6 91 42.9
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 2.5e-09 66.6 61 60.7
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 9.6e-09 64.7 33 90.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.1e-08 63.5 39 74.4
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 9.0e-07 58.2 34 82.4
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 3.4e-06 56.2 54 61.1
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 3.4e-06 56.2 30 86.7
CBR_g49287 Chara braunii HOM05D005047 ORTHO05D136809 7.6e-06 55.1 46 60.9


User provided reference genes

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