Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002498 Camellia sinensis var. sinensis HOM05D002333 ORTHO05D113561 4.8e-31 137.1 66 100.0
CSS0003627 Camellia sinensis var. sinensis HOM05D002333 ORTHO05D002485 5.6e-11 70.5 35 97.1
Lj6A63T26 Lonicera japonica HOM05D002333 ORTHO05D002485 7.5e-08 60.1 34 79.4
Nn1g09775 Nelumbo nucifera HOM05D002333 ORTHO05D002485 1.3e-07 59.3 35 68.6
TAR633G1741 Trochodendron aralioides HOM05D002333 ORTHO05D002485 1.7e-07 58.9 35 71.4
CSS0016173 Camellia sinensis var. sinensis HOM05D002333 ORTHO05D002485 2.2e-07 58.5 35 71.4
CSS0031192 Camellia sinensis var. sinensis HOM05D002333 ORTHO05D002485 2.2e-07 58.5 35 71.4
Dinv22677 Davidia involucrata HOM05D002333 ORTHO05D002485 2.2e-07 58.5 35 74.3
Potri.002G230600 Populus trichocarpa HOM05D002333 ORTHO05D002485 2.2e-07 58.5 35 77.1
Actinidia35900 Actinidia chinensis HOM05D002333 ORTHO05D002485 2.9e-07 58.2 35 71.4
arahy.Tifrunner.gnm1.ann1.95866G Arachis hypogaea HOM05D002333 ORTHO05D002485 3.7e-07 57.8 35 77.1
arahy.Tifrunner.gnm1.ann1.G657RZ Arachis hypogaea HOM05D002333 ORTHO05D002485 3.7e-07 57.8 35 77.1
DCAR_028452 Daucus carota HOM05D002333 ORTHO05D002485 3.7e-07 57.8 34 70.6
Lj3A232G40 Lonicera japonica HOM05D002333 ORTHO05D002485 3.7e-07 57.8 34 76.5
Lalb_Chr06g0164551 Lupinus albus HOM05D002333 ORTHO05D002485 3.7e-07 57.8 34 76.5
SalBow3G2976 Salvia bowleyana HOM05D002333 ORTHO05D002485 3.7e-07 57.8 34 79.4
CiPaw.01G104900 Carya illinoinensis HOM05D002333 ORTHO05D002485 6.4e-07 57.0 35 68.6
Glyma.08G362100 Glycine max HOM05D002333 ORTHO05D002485 6.4e-07 57.0 35 74.3
Glyma.18G299800 Glycine max HOM05D002333 ORTHO05D002485 6.4e-07 57.0 35 74.3
Lalb_Chr04g0257251 Lupinus albus HOM05D002333 ORTHO05D002485 6.4e-07 57.0 35 74.3
SalBow6G3092 Salvia bowleyana HOM05D002333 ORTHO05D002485 6.4e-07 57.0 34 76.5
CiPaw.02G056800 Carya illinoinensis HOM05D002333 ORTHO05D002485 8.3e-07 56.6 35 68.6
PSO675G2680 Papaver somniferum HOM05D002333 ORTHO05D002485 8.3e-07 56.6 35 71.4
Rhsim09G0033200 Rhododendron simsii HOM05D002333 ORTHO05D002485 8.3e-07 56.6 35 77.1
Lalb_Chr10g0091081 Lupinus albus HOM05D002333 ORTHO05D002485 1.1e-06 56.2 35 74.3
Os05g0299500 Oryza sativa ssp. japonica HOM05D002333 ORTHO05D002485 1.1e-06 56.2 35 71.4
PGR083G0974 Punica granatum HOM05D002333 ORTHO05D002485 1.1e-06 56.2 35 74.3
SGA_v2.0_scaffold12G06146 Striga asiatica HOM05D002333 ORTHO05D002485 1.1e-06 56.2 34 82.4
ATR0743G242 Amborella trichopoda HOM05D002333 ORTHO05D002485 1.4e-06 55.8 35 68.6
Oeu007718.2 Olea europaea HOM05D002333 ORTHO05D002485 1.4e-06 55.8 34 70.6
Phvul.008G002800 Phaseolus vulgaris HOM05D002333 ORTHO05D002485 1.4e-06 55.8 35 71.4
Sabra14G0115400 Salix brachista HOM05D002333 ORTHO05D002485 1.4e-06 55.8 35 71.4
TWI36G1538 Tripterygium wilfordii HOM05D002333 ORTHO05D002485 1.4e-06 55.8 35 71.4
VMungo1383G3027 Vigna mungo HOM05D002333 ORTHO05D002485 1.4e-06 55.8 35 71.4
Atru.chr3.1640 Acer truncatum HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 71.4
Aqoxy2G04118 Aquilegia oxysepala HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 68.6
Cfa015786 Carpinus fangiana HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 62.9
Ca_25796_v3 Cicer arietinum L. HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 71.4
COL.COLO4_24370 Corchorus olitorius HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 71.4
MELO3C011607.2 Cucumis melo HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 68.6
HanXRQChr02g0057791 Helianthus annuus HOM05D002333 ORTHO05D002485 1.9e-06 55.5 34 67.6
Potri.014G151800 Populus trichocarpa HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 71.4
Thecc.04G183500 Theobroma cacao HOM05D002333 ORTHO05D002485 1.9e-06 55.5 35 71.4
Cc03_g11300 Coffea canephora HOM05D002333 ORTHO05D002485 2.4e-06 55.1 34 67.6
Gohir.A10G135000 Gossypium hirsutum HOM05D002333 ORTHO05D002485 2.4e-06 55.1 35 68.6
Gorai.011G145300 Gossypium raimondii HOM05D002333 ORTHO05D002485 2.4e-06 55.1 35 68.6
HanXRQChr11g0344571 Helianthus annuus HOM05D002333 ORTHO05D002485 2.4e-06 55.1 34 70.6
Medtr7g006080 Medicago truncatula HOM05D002333 ORTHO05D002485 2.4e-06 55.1 35 68.6
Sabra02G0175800 Salix brachista HOM05D002333 ORTHO05D002485 2.4e-06 55.1 35 74.3
TPR.G15615 Trifolium pratense HOM05D002333 ORTHO05D002485 2.4e-06 55.1 35 68.6
GSVIVG01013559001 Vitis vinifera HOM05D002333 ORTHO05D002485 2.4e-06 55.1 35 65.7
Gohir.D10G131600 Gossypium hirsutum HOM05D002333 ORTHO05D002485 3.2e-06 54.7 35 68.6
Lalb_Chr02g0144461 Lupinus albus HOM05D002333 ORTHO05D002485 3.2e-06 54.7 34 73.5
ClCG08G004210 Citrullus lanatus HOM05D002333 ORTHO05D002485 4.1e-06 54.3 35 65.7
CsaV3_6G003700 Cucumis sativus L. HOM05D002333 ORTHO05D002485 4.1e-06 54.3 35 65.7
Migut.N00469 Erythranthe guttata HOM05D002333 ORTHO05D002485 4.1e-06 54.3 34 76.5
Eucgr.A00237 Eucalyptus grandis HOM05D002333 ORTHO05D002485 4.1e-06 54.3 34 73.5
Gohir.A02G014200 Gossypium hirsutum HOM05D002333 ORTHO05D002485 4.1e-06 54.3 35 68.6
Gorai.005G019300 Gossypium raimondii HOM05D002333 ORTHO05D002485 4.1e-06 54.3 35 68.6
RcHm_v2.0_Chr4g0408431 Rosa chinensis HOM05D002333 ORTHO05D002485 4.1e-06 54.3 35 71.4
Lsat_1_v5_gn_1_71481 Lactuca sativa HOM05D002333 ORTHO05D002485 5.4e-06 53.9 34 70.6
Psat3g207440 Pisum sativum HOM05D002333 ORTHO05D002485 5.4e-06 53.9 35 65.7
QL10p046272 Quercus lobata HOM05D002333 ORTHO05D002485 5.4e-06 53.9 35 65.7
Duzib151G0866 Durio zibethinus HOM05D002333 ORTHO05D002485 7.0e-06 53.5 35 68.6
FAN07G1679 Fragaria x ananassa HOM05D002333 ORTHO05D002485 7.0e-06 53.5 35 65.7
FAN17G0668 Fragaria x ananassa HOM05D002333 ORTHO05D002485 7.0e-06 53.5 35 65.7
FAN22G2067 Fragaria x ananassa HOM05D002333 ORTHO05D002485 7.0e-06 53.5 35 65.7
MD04G1036800 Malus domestica HOM05D002333 ORTHO05D002485 7.0e-06 53.5 35 68.6
Medtr7g006100 Medicago truncatula HOM05D002976 ORTHO05D003217 7.0e-06 53.5 36 66.7
Sed0025102 Sechium edule HOM05D002333 ORTHO05D002485 7.0e-06 53.5 35 65.7
Cpa.g.sc71.42 Carica papaya HOM05D002333 ORTHO05D002485 9.2e-06 53.1 35 65.7
ClCG07G016550 Citrullus lanatus HOM05D002333 ORTHO05D002485 9.2e-06 53.1 35 65.7
CsaV3_4G003680 Cucumis sativus L. HOM05D002333 ORTHO05D002485 9.2e-06 53.1 35 65.7
Hma1.2p1_0597F.1_g186380 Hydrangea macrophylla HOM05D002333 ORTHO05D002485 9.2e-06 53.1 35 71.4
Peaxi162Scf00058g00139 Petunia axillaris HOM05D002333 ORTHO05D002485 9.2e-06 53.1 34 73.5


User provided reference genes

Program Settings