Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.5e-43 178.3 88 100.0
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.5e-24 114.4 61 93.4
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.7e-23 112.5 61 91.8
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 2.9e-23 111.7 61 91.8
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 4.2e-22 107.8 63 85.7
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-21 105.5 60 86.7
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-21 105.5 60 86.7
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 3.5e-21 104.8 61 83.6
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.3e-20 102.8 61 85.2
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.3e-20 102.8 61 83.6
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 2.3e-20 102.1 61 83.6
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 3.0e-20 101.7 61 86.9
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.0e-20 101.7 61 86.9
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.9e-20 101.3 61 80.3
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 5.1e-20 100.9 57 87.7
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.1e-20 100.9 60 83.3
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.9e-19 99.0 59 84.7
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 1.9e-19 99.0 59 81.4
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 2.5e-19 98.6 68 76.5
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 3.3e-19 98.2 60 81.7
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 3.3e-19 98.2 61 80.3
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 3.3e-19 98.2 59 81.4
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 3.3e-19 98.2 61 83.6
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 3.3e-19 98.2 61 83.6
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 5.7e-19 97.4 60 80.0
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 5.7e-19 97.4 60 80.0
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 5.7e-19 97.4 60 81.7
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 5.7e-19 97.4 60 81.7
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 5.7e-19 97.4 61 75.4
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 5.7e-19 97.4 60 81.7
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 7.4e-19 97.1 61 73.8
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 9.7e-19 96.7 60 81.7
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 9.7e-19 96.7 59 83.1
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 9.7e-19 96.7 59 83.1
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 9.7e-19 96.7 60 80.0
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.7e-19 96.7 61 78.7
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 9.7e-19 96.7 61 82.0
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 9.7e-19 96.7 59 81.4
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 9.7e-19 96.7 60 80.0
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.3e-18 96.3 59 83.1
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.3e-18 96.3 60 80.0
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 1.3e-18 96.3 70 67.1
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 1.3e-18 96.3 61 75.4
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.6e-18 95.9 60 80.0
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.6e-18 95.9 60 80.0
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 1.6e-18 95.9 60 80.0
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.6e-18 95.9 58 86.2
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.6e-18 95.9 58 86.2
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 1.6e-18 95.9 59 83.1
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 2.2e-18 95.5 62 77.4
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 2.8e-18 95.1 62 74.2
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 2.8e-18 95.1 61 82.0
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 2.8e-18 95.1 61 82.0
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 3.7e-18 94.7 59 81.4
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 3.7e-18 94.7 60 76.7
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 3.7e-18 94.7 59 81.4
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.8e-18 94.4 59 79.7
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 4.8e-18 94.4 60 75.0
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 6.3e-18 94.0 61 75.4
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 6.3e-18 94.0 61 73.8
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 6.3e-18 94.0 61 73.8
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 8.2e-18 93.6 59 79.7
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 8.2e-18 93.6 60 78.3
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.1e-17 93.2 59 76.3
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 1.1e-17 93.2 62 75.8
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-17 93.2 61 75.4
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 1.1e-17 93.2 59 74.6
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.1e-17 93.2 60 73.3
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 1.1e-17 93.2 61 73.8
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.1e-17 93.2 61 73.8
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.4e-17 92.8 59 74.6
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 1.8e-17 92.4 57 78.9
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 2.4e-17 92.0 61 78.7
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 2.4e-17 92.0 61 75.4
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.1e-17 91.7 58 77.6
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.1e-17 91.7 61 70.5
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 4.1e-17 91.3 60 80.0
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 4.1e-17 91.3 60 75.0
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 4.1e-17 91.3 60 73.3
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 5.3e-17 90.9 59 79.7
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 6.9e-17 90.5 61 73.8
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 6.9e-17 90.5 60 73.3
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 6.9e-17 90.5 60 73.3
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 9.0e-17 90.1 60 68.3
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.2e-16 89.7 60 76.7
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.2e-16 89.7 60 73.3
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.2e-16 89.7 60 73.3
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.2e-16 89.7 60 73.3
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.5e-16 89.4 61 72.1
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 4.5e-16 87.8 59 71.2
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 4.5e-16 87.8 62 69.4
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 5.9e-16 87.4 60 71.7
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 5.9e-16 87.4 58 75.9
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 7.7e-16 87.0 58 74.1
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.3e-15 86.3 58 75.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 1.3e-15 86.3 57 75.4
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.7e-15 85.9 57 75.4
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.2e-15 85.5 60 73.3
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.9e-15 85.1 56 73.2
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 5.0e-15 84.3 60 73.3
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 6.5e-15 84.0 57 71.9
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 8.5e-15 83.6 59 71.2
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.1e-14 83.2 53 77.4
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 2.5e-14 82.0 63 69.8
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 9.4e-14 80.1 60 66.7
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.2e-13 79.7 60 63.3
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 3.6e-13 78.2 52 75.0
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 4.6e-13 77.8 58 63.8
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 4.6e-13 77.8 65 58.5
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.4e-12 76.3 55 65.5
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 3.0e-12 75.1 56 62.5
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 3.9e-12 74.7 55 70.9
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.1e-12 74.3 72 50.0
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 6.7e-12 73.9 57 57.9
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 8.8e-12 73.6 66 54.5
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.1e-11 73.2 46 76.1
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.3e-11 71.2 72 47.2
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 7.4e-11 70.5 68 50.0
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 9.7e-11 70.1 41 82.9
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-11 70.1 57 52.6
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-11 70.1 66 50.0
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-11 70.1 57 56.1
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-11 70.1 68 48.5
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.7e-10 69.3 59 55.9
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-10 69.3 57 52.6
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-10 68.9 55 54.5
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-10 68.9 55 54.5
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 2.8e-10 68.6 57 54.4
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.8e-10 68.6 57 52.6
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 2.8e-10 68.6 57 52.6
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 3.7e-10 68.2 66 48.5
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 6.3e-10 67.4 66 48.5
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 8.2e-10 67.0 68 48.5
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.4e-09 66.2 52 61.5
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-09 65.9 68 47.1
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 9.1e-09 63.5 61 50.8
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.0e-07 57.8 42 64.3
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-06 55.8 55 45.5


User provided reference genes

Program Settings