Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.1e-161 571.6 266 100.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.5e-158 562.0 266 98.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.3e-138 496.5 259 86.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.8e-137 492.7 270 85.9
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 7.7e-136 487.3 255 87.1
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.3e-135 486.5 260 85.0
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 2.2e-135 485.7 264 84.5
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.9e-135 485.3 248 88.7
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 5.0e-135 484.6 267 83.1
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.5e-135 483.8 266 83.1
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.1e-134 483.4 269 83.6
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 3.2e-134 481.9 270 84.1
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.2e-133 479.9 268 84.0
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.2e-133 479.9 268 82.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.6e-133 479.6 268 82.5
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 3.6e-133 478.4 264 84.1
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.9e-133 477.2 267 83.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.8e-132 476.1 263 83.3
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.8e-132 476.1 264 83.7
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.3e-132 475.7 265 83.8
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.9e-132 474.9 265 83.0
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.7e-132 474.2 264 83.3
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 4.4e-131 471.5 266 82.0
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.7e-131 471.1 265 81.9
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.3e-130 469.9 268 81.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.3e-130 469.9 273 82.1
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.2e-130 469.2 263 82.1
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 4.8e-130 468.0 261 82.0
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 4.8e-130 468.0 268 81.0
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 4.8e-130 468.0 265 80.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-129 466.8 266 81.6
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 4.1e-129 464.9 264 79.2
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 4.1e-129 464.9 268 79.9
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 5.3e-129 464.5 268 79.9
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 7.0e-129 464.2 257 82.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 9.1e-129 463.8 268 80.6
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.2e-128 463.4 268 79.1
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.6e-128 463.0 270 79.6
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-128 462.2 268 78.7
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-128 462.2 268 78.7
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.7e-127 459.5 265 81.1
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.2e-127 459.1 248 84.7
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 3.8e-127 458.4 252 82.5
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-126 456.4 260 81.5
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.5e-126 456.4 266 80.1
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.5e-126 455.7 265 79.6
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 4.2e-126 454.9 263 79.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 4.2e-126 454.9 267 80.1
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 5.5e-126 454.5 260 78.8
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.2e-125 453.4 271 79.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.1e-125 452.6 265 78.9
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 2.7e-125 452.2 265 77.4
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.7e-125 452.2 265 79.6
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.4e-124 449.9 265 79.2
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.0e-124 448.7 253 80.6
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 4.0e-124 448.4 265 78.5
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 6.7e-124 447.6 269 78.1
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-123 446.8 253 81.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.5e-123 446.4 272 76.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.0e-123 446.0 272 76.8
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 3.3e-123 445.3 272 76.5
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.3e-123 445.3 271 77.9
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 4.4e-123 444.9 271 76.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 3.7e-122 441.8 272 76.1
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 6.3e-122 441.0 253 79.4
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 8.2e-122 440.7 266 74.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.1e-121 440.3 272 75.7
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.4e-121 439.1 277 74.4
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 3.1e-121 438.7 266 74.4
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 5.3e-121 438.0 262 75.2
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 7.0e-121 437.6 265 79.6
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 9.1e-121 437.2 273 78.0
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 9.1e-121 437.2 260 75.4
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.2e-120 436.8 278 75.2
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.2e-120 436.8 261 77.0
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.6e-120 436.4 278 75.2
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.7e-120 435.6 279 73.1
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 3.5e-120 435.3 268 76.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.5e-120 434.9 246 80.1
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.5e-120 434.9 278 75.2
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.9e-120 434.5 280 74.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.7e-120 434.1 257 78.2
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.0e-119 433.7 267 76.4
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.1e-118 430.3 256 77.3
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 3.2e-118 428.7 259 76.8
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.1e-117 426.0 262 73.3
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.7e-117 425.6 209 91.4
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.7e-117 425.6 239 81.6
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 3.6e-117 425.2 255 74.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.7e-117 424.9 272 74.6
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.1e-117 424.5 223 87.4
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.0e-116 422.2 272 73.5
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 4.0e-116 421.8 270 74.1
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 6.8e-116 421.0 265 73.6
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 8.8e-116 420.6 267 73.4
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.2e-115 420.2 270 73.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.4e-115 418.3 288 69.4
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 7.5e-115 417.5 270 73.7
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.2e-114 416.0 286 69.9
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.2e-114 416.0 256 74.6
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 5.4e-113 411.4 266 71.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.1e-113 410.6 259 73.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.7e-112 409.1 219 84.5
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.5e-112 408.7 268 73.9
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.9e-111 405.6 242 75.2
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.9e-110 402.9 268 69.8
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.3e-108 396.0 294 68.4
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 3.0e-108 395.6 291 65.6
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 4.4e-107 391.7 231 74.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 5.9e-104 381.3 270 68.5
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.8e-104 380.9 221 80.5
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 7.8e-104 380.9 231 71.9
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.9e-103 379.0 224 75.4
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 5.6e-102 374.8 235 68.5
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 2.8e-101 372.5 237 70.0
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.8e-100 367.9 238 66.8
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.9e-100 367.5 222 75.2
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.2e-98 362.8 222 69.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 8.3e-98 360.9 235 68.1
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.3e-95 353.6 192 82.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.2e-93 347.1 263 64.6
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 6.2e-93 344.7 305 58.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.0e-88 329.7 164 87.8
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.7e-88 329.3 231 68.0
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.5e-88 328.9 335 53.1
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 9.5e-86 320.9 181 82.3
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.1e-85 319.7 282 59.6
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.4e-81 306.2 215 59.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.0e-80 301.6 198 65.2
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 3.9e-79 298.9 162 85.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.1e-69 266.5 163 78.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 5.2e-68 261.9 157 77.1
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 9.0e-68 261.2 139 84.9
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.0e-60 234.6 213 57.3
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.5e-59 233.8 199 58.8
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.8e-52 210.3 121 78.5
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.3e-50 204.1 121 76.9
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.5e-38 163.3 104 76.9
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.6e-32 142.5 83 81.9
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.5e-26 122.1 67 73.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.9e-25 120.6 72 76.4
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 4.7e-24 115.9 80 65.0
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.5e-22 110.9 65 70.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 2.0e-22 110.5 54 87.0
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 6.3e-21 105.5 64 73.4
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.4e-17 91.7 71 66.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.2e-16 91.3 90 51.1
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.0e-15 86.7 89 52.8
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 5.7e-14 82.4 83 49.4
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.2e-13 80.5 58 72.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 3.7e-13 79.7 43 74.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 8.2e-13 78.6 52 71.2
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.9e-11 72.4 55 58.2
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.5e-09 67.0 55 50.9
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.3e-07 60.5 58 53.4
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 4.4e-06 56.2 49 51.0


User provided reference genes

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