Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1903.6 987 100.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1644.4 991 88.5
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1419.8 1000 76.6
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1346.6 1016 72.0
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1328.2 1020 70.8
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1199.5 955 68.2
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1145.2 1014 61.4
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1129.4 1002 62.3
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 0.0e+00 1126.7 989 62.9
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 3.0e-310 1068.5 962 59.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 2.4e-307 1058.9 984 59.2
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 2.3e-302 1042.3 990 58.0
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 5.7e-301 1037.7 1104 54.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.3e-300 1036.6 1001 59.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 8.5e-297 1023.8 996 56.8
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 1.9e-296 1022.7 1001 56.6
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 2.5e-296 1022.3 998 57.9
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 5.5e-296 1021.1 974 58.1
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 5.1e-294 1014.6 998 57.0
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 4.8e-292 1008.1 1006 56.4
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 1.0e-289 1000.3 977 56.6
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.7e-289 999.6 987 56.3
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.9e-289 998.8 1074 54.5
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 5.0e-289 998.0 992 56.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 6.5e-289 997.7 977 57.4
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.0e-286 990.3 985 57.8
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 4.4e-285 984.9 1052 55.0
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 2.8e-284 982.2 995 55.0
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 4.5e-282 974.9 986 55.5
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.0e-281 973.8 980 55.9
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 5.0e-281 971.5 986 55.9
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.1e-280 970.3 1025 54.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.2e-279 966.8 998 55.1
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.7e-279 964.9 979 56.4
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.0e-278 963.8 998 54.6
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.1e-277 960.3 834 61.9
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.0e-277 959.5 979 56.2
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 9.7e-277 957.2 1002 54.7
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 2.2e-276 956.1 1009 54.9
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 8.2e-276 954.1 979 56.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.2e-274 950.3 1031 53.2
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 1.3e-273 946.8 836 60.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 6.5e-273 944.5 994 53.8
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 9.4e-272 940.6 1020 52.2
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 6.1e-271 937.9 992 53.2
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.0e-270 937.2 1052 51.2
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.8e-270 936.4 990 53.5
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 6.7e-270 934.5 987 53.9
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 2.8e-268 929.1 1028 52.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 1.1e-267 927.2 1043 50.8
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.3e-265 920.2 1040 51.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 5.0e-265 918.3 1040 51.3
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 8.5e-265 917.5 1003 52.0
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 6.1e-263 911.4 992 52.5
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 2.3e-262 909.4 986 53.5
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 2.3e-262 909.4 1128 48.1
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 5.2e-262 908.3 992 51.9
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 2.6e-261 906.0 1010 52.6
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.4e-261 905.6 957 53.9
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.7e-260 903.3 1002 52.9
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-260 902.9 967 54.4
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.8e-260 902.5 1032 50.2
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.0e-259 897.9 979 53.8
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.0e-257 894.0 1006 51.1
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.0e-257 891.7 974 51.0
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 6.6e-257 891.3 1063 50.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.2e-256 888.6 992 52.5
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.0e-254 882.1 892 55.5
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 4.1e-251 872.1 979 52.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 4.5e-250 868.6 984 52.5
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 5.9e-250 868.2 934 52.2
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 6.6e-249 864.8 990 51.6
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 4.3e-248 862.1 938 50.2
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.6e-247 860.1 981 49.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 8.0e-247 857.8 994 51.4
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 5.8e-245 851.7 1195 45.9
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.1e-243 847.4 989 49.5
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 4.1e-243 845.5 989 49.2
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 2.7e-242 842.8 986 48.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.3e-241 840.5 970 51.5
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 8.6e-241 837.8 982 49.4
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 8.6e-241 837.8 991 49.0
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 7.3e-240 834.7 987 48.5
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 7.3e-240 834.7 987 48.4
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 9.5e-240 834.3 987 48.5
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 4.7e-239 832.0 987 48.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 4.7e-239 832.0 987 48.4
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.8e-238 830.1 981 48.7
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 8.9e-230 801.2 978 48.4
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 2.9e-228 796.2 1050 46.1
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.1e-224 784.3 937 50.2
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 2.4e-219 766.5 830 51.7
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 7.6e-213 745.0 1009 45.6
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.6e-207 727.2 1050 44.4
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 4.8e-207 725.7 1002 44.3
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 6.9e-206 721.8 834 50.4
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.2e-204 716.8 1020 45.2
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.2e-203 713.0 987 44.5
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 6.9e-198 695.3 888 45.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.8e-193 680.6 966 45.5
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.6e-181 640.2 417 76.0
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 6.5e-180 635.6 1050 39.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 7.7e-157 558.9 983 39.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 3.0e-153 547.0 381 70.3
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.1e-146 522.7 389 65.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.5e-136 491.5 841 36.1
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 5.2e-129 466.5 956 34.4
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 9.2e-110 402.5 569 45.5
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.3e-108 397.9 1060 29.5
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.7e-95 355.1 545 41.1
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.2e-80 305.8 825 29.0
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.1e-75 289.3 279 58.1
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 1.5e-59 235.7 178 67.4
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.0e-56 225.3 173 67.1
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.1e-37 162.2 106 74.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-32 145.6 397 31.5
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-27 129.4 109 61.5
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 8.3e-26 123.6 121 53.7
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.1e-25 121.7 383 31.9
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.9e-22 112.5 447 26.8
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.6e-21 108.2 129 46.5
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 4.0e-20 104.8 98 64.3
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 7.0e-17 94.0 72 59.7
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 9.2e-17 93.6 161 39.1
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 8.6e-15 87.0 94 50.0
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 1.9e-09 69.3 91 48.4
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.7e-07 62.8 41 73.2
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 7.3e-06 57.4 70 42.9


User provided reference genes

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