Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 621 100.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1092.0 612 85.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1082.4 612 84.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 2.7e-309 1064.7 597 85.3
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 5.5e-302 1040.4 630 80.8
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 1.6e-301 1038.9 598 83.1
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 2.1e-301 1038.5 602 82.6
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 1.7e-298 1028.9 589 84.4
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 1.1e-297 1026.2 608 81.1
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 3.1e-297 1024.6 592 82.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 4.5e-296 1020.8 589 82.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 7.7e-296 1020.0 598 81.9
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 2.2e-295 1018.5 598 81.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 2.9e-295 1018.1 599 81.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 8.5e-295 1016.5 599 80.8
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 1.4e-294 1015.8 614 80.1
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.9e-294 1015.4 598 81.6
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 4.2e-294 1014.2 598 81.3
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 7.2e-294 1013.4 598 81.6
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 6.1e-293 1010.4 601 81.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 6.1e-293 1010.4 608 80.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 6.1e-293 1010.4 591 82.2
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 1.0e-292 1009.6 599 80.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 1.4e-292 1009.2 605 80.3
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 1.4e-292 1009.2 571 84.1
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 1.8e-292 1008.8 596 81.2
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 1.8e-292 1008.8 598 81.4
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 5.2e-292 1007.3 577 82.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 8.8e-292 1006.5 598 80.8
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.1e-291 1006.1 570 83.7
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 2.0e-291 1005.4 581 82.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 2.8e-290 1001.5 598 80.4
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 3.7e-290 1001.1 578 82.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 4.8e-290 1000.7 581 82.1
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 4.8e-290 1000.7 598 79.8
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 6.3e-290 1000.3 598 79.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 1.1e-289 999.6 613 79.4
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 1.4e-289 999.2 576 83.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.4e-289 999.2 575 83.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 3.1e-289 998.0 581 81.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 4.1e-289 997.7 594 80.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 4.1e-289 997.7 594 80.6
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 1.2e-288 996.1 595 80.2
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 1.6e-288 995.7 613 78.6
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 4.5e-288 994.2 613 78.6
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 7.7e-288 993.4 598 80.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 1.0e-287 993.0 605 79.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 1.0e-287 993.0 582 81.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.3e-287 992.6 582 81.6
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 1.3e-287 992.6 606 77.9
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-287 992.3 573 82.4
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 3.8e-287 991.1 597 79.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 5.0e-287 990.7 571 82.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 5.0e-287 990.7 605 78.8
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 1.1e-286 989.6 589 80.6
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 5.5e-286 987.3 597 79.6
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 7.2e-286 986.9 577 82.3
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 1.2e-285 986.1 604 79.0
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 2.7e-285 984.9 582 80.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.0e-284 983.0 574 81.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.0e-284 983.0 581 80.2
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 1.8e-284 982.2 606 78.2
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 2.3e-284 981.9 573 81.7
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 4.0e-284 981.1 584 80.7
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 8.8e-284 979.9 614 77.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.2e-283 979.5 581 80.0
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 1.2e-283 979.5 582 80.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 1.5e-283 979.2 614 77.7
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 2.0e-283 978.8 614 77.2
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.6e-283 978.4 611 78.1
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 2.6e-283 978.4 578 81.1
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 3.3e-283 978.0 588 80.1
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.4e-283 977.6 581 79.9
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 2.2e-282 975.3 623 76.2
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 6.3e-282 973.8 617 77.3
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 8.2e-282 973.4 621 76.7
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 1.4e-281 972.6 595 78.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 1.8e-281 972.2 629 75.0
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 3.1e-281 971.5 593 78.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 3.1e-281 971.5 601 78.4
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 9.1e-281 969.9 587 79.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 2.0e-280 968.8 593 78.2
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 2.7e-280 968.4 614 75.1
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 3.5e-280 968.0 592 79.2
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 1.0e-279 966.5 592 79.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 1.7e-279 965.7 599 77.3
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 2.2e-279 965.3 552 81.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 5.0e-279 964.1 626 74.9
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 5.0e-279 964.1 575 79.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 2.5e-278 961.8 619 74.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 4.2e-278 961.1 595 77.6
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 1.6e-277 959.1 627 74.3
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 1.0e-276 956.4 572 80.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 5.2e-276 954.1 588 77.2
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 6.8e-276 953.7 582 78.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 2.2e-274 948.7 603 76.6
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 6.3e-274 947.2 590 76.9
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 8.3e-274 946.8 587 76.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 5.4e-273 944.1 615 74.6
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 1.2e-272 943.0 602 75.4
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 1.6e-272 942.6 603 75.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 3.5e-272 941.4 601 75.4
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 1.3e-271 939.5 598 76.1
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 5.0e-271 937.6 614 73.8
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 6.5e-271 937.2 599 75.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 6.5e-271 937.2 577 78.2
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 1.1e-270 936.4 582 78.4
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 2.5e-270 935.3 589 75.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 2.5e-270 935.3 579 78.6
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 2.5e-270 935.3 579 78.6
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 2.5e-270 935.3 579 78.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 7.2e-270 933.7 568 77.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 7.2e-270 933.7 574 78.0
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 9.5e-270 933.3 589 76.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 1.2e-269 932.9 572 77.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 2.1e-269 932.2 584 77.6
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 2.1e-269 932.2 585 77.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.8e-269 931.8 601 75.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.8e-269 931.8 601 75.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.8e-269 931.8 601 75.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.8e-269 931.8 601 75.5
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 3.6e-269 931.4 589 76.7
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 4.7e-269 931.0 596 76.5
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 3.4e-267 924.9 575 78.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 3.4e-267 924.9 575 78.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 5.7e-267 924.1 571 76.4
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 7.5e-267 923.7 573 76.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 5.4e-265 917.5 637 72.7
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 2.7e-264 915.2 587 75.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 7.8e-264 913.7 629 71.9
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 4.0e-260 901.4 512 84.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 2.4e-257 892.1 569 75.6
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.2e-256 889.8 572 75.5
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 5.6e-254 880.9 617 70.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 1.1e-252 876.7 677 64.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 4.0e-252 874.8 594 70.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 6.8e-252 874.0 619 70.4
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.0e-249 864.0 569 72.2
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 2.8e-245 852.0 580 73.1
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 8.9e-244 847.0 575 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.0e-243 845.9 569 72.1
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 6.4e-242 840.9 570 70.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 9.2e-241 837.0 661 64.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 3.5e-240 835.1 491 82.5
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 1.2e-237 826.6 464 83.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 7.6e-235 817.4 591 70.2
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.8e-173 612.8 606 56.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.2e-158 564.3 286 92.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.1e-156 554.7 328 82.0
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.6e-147 527.3 457 58.4
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-127 461.1 575 46.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-98 364.8 397 53.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 9.6e-97 358.6 264 65.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.7e-66 256.1 131 93.1
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-59 235.0 156 76.3
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.2e-48 198.0 122 77.0
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 8.5e-45 186.0 163 57.7
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-33 147.9 130 58.5
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.6e-30 138.7 76 85.5
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 5.9e-30 136.7 409 30.1
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 9.5e-28 129.4 68 91.2
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.0e-25 121.7 96 64.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 9.8e-25 119.4 430 27.9
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-23 115.9 75 68.0
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.4e-23 115.5 256 31.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.7e-22 111.3 396 27.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.7e-21 108.6 407 26.8
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-18 98.2 266 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 5.8e-17 93.6 220 31.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-08 65.5 139 34.5
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-08 64.7 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.6e-06 58.9 38 73.7


User provided reference genes

Program Settings